View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20165_low_5 (Length: 510)

Name: NF20165_low_5
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20165_low_5
NF20165_low_5
[»] chr7 (5 HSPs)
chr7 (10-494)||(38302333-38302824)
chr7 (138-301)||(21607848-21608015)
chr7 (190-301)||(40892209-40892320)
chr7 (234-297)||(18815842-18815905)
chr7 (245-297)||(27990400-27990452)
[»] chr6 (4 HSPs)
chr6 (107-297)||(666843-667037)
chr6 (159-301)||(17227563-17227705)
chr6 (138-171)||(29064171-29064204)
chr6 (138-171)||(29119025-29119058)
[»] scaffold0032 (1 HSPs)
scaffold0032 (107-297)||(58845-59039)
[»] chr8 (2 HSPs)
chr8 (138-297)||(31423664-31423827)
chr8 (107-171)||(13099646-13099710)
[»] chr2 (4 HSPs)
chr2 (144-301)||(22298532-22298689)
chr2 (144-301)||(33937220-33937377)
chr2 (138-171)||(20534472-20534505)
chr2 (138-171)||(38938140-38938173)
[»] chr5 (4 HSPs)
chr5 (107-297)||(27891277-27891471)
chr5 (140-176)||(25907472-25907508)
chr5 (182-268)||(8895042-8895128)
chr5 (245-301)||(31963117-31963173)
[»] chr4 (6 HSPs)
chr4 (204-297)||(24059323-24059416)
chr4 (138-179)||(17839111-17839152)
chr4 (194-301)||(12915461-12915568)
chr4 (190-295)||(4303653-4303758)
chr4 (190-295)||(15706011-15706116)
chr4 (190-262)||(17839018-17839090)
[»] chr1 (3 HSPs)
chr1 (107-294)||(5556846-5557037)
chr1 (107-207)||(28521309-28521409)
chr1 (144-295)||(49369389-49369538)
[»] scaffold0041 (1 HSPs)
scaffold0041 (190-301)||(73964-74075)
[»] chr3 (2 HSPs)
chr3 (108-176)||(8542086-8542154)
chr3 (144-301)||(39633277-39633434)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 494
Target Start/End: Complemental strand, 38302824 - 38302333
Alignment:
Q  10 attatactaggtttttctctttatatgagtttcattctcaaattactagataccnnnnnnnnnnnn-----aataaaccaagcgaattatattagnnnnn 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||         
T  38302824 attatactaggtttttctctttatatgagtttcattctcaaattactagatacctttttttttttttttttaataaaccaagcgaattatattagaaaaa 38302725  T
Q  105 nncaatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaaca 204  Q
      |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  38302724 aacaatcagtccatcaagcataagacgtgttggagggagctgaaaagagttaattacaatacattaaggctagaaatagccaatgaaacaaaaacaaaca 38302625  T
Q  205 ttacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgttgta 304  Q
    ||||||||||||| |||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38302624 ttacaacacagcccgtaaacaacttaagagattttgcctccaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgttgta 38302525  T
Q  305 gcacatgttttta--ataatgatgatactcaattaagttaccatatttcagtgttgtattagttgtagcacatatttgcaatatctatatataccaattt 402  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38302524 gcacatgtttttatcataatgatgatactcaattaagttaccgtattttagtgttgtattagttgtagcacatatttgcaatatctatatataccaattt 38302425  T
Q  403 aaatagaaaaagagtctttataataagggacacagttactatataacatgtgttcatagtgttgaataaaatttggtaactagcaaaataac 494  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38302424 aaatagaaaaggagtgtttataataagggacacagttactatataacatgtgttcatagtgttgaataaaatttggtaactagcaaaataac 38302333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 301
Target Start/End: Original strand, 21607848 - 21608015
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaaagctagaaatagcc---aat--gaaacaaaaacaaacattacaacacagcctgtaaacaacttagg 232  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||   |||   |||| |||||| || |||||| |||| ||||||||||| ||      
T  21607848 agggagctgaaaagagttaattacattacagtaaggcta-aaatagccataaatcaaaaaccaaaacagactttacaagacagactgtaaacaacataaa 21607946  T
Q  233 ggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
    || ||||  || |||||| |||| |||||| | |||||   | |||| ||||||||||||||| |||||    
T  21607947 ggtttttgtctccaaaagggataatcaaaagcgaacgtgatgtagttagctttcaaccaccaaaacgtt 21608015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 40892320 - 40892209
Alignment:
Q  190 aaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaac 289  Q
    |||| |||||| || |||||| |||| ||||||||||| || ||||||||  || |||||| ||||||||||| | |||||   | |||| |||||||||    
T  40892320 aaaccaaaacagactttacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaac 40892221  T
Q  290 caccaatacgtt 301  Q
    |||||| |||||    
T  40892220 caccaaaacgtt 40892209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 18815905 - 18815842
Alignment:
Q  234 gattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    |||||| ||| |||||| |||||||||| || ||||||  | ||||||||||||||||||||||    
T  18815905 gattttgcctccaaaagggatagtcaaagtcgaacgtaatgtagttcgctttcaaccaccaata 18815842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 27990452 - 27990400
Alignment:
Q  245 caaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    |||||| |||||||||| || |||||| || |||||| |||||||||||||||    
T  27990452 caaaagggatagtcaaagtcgaacgtaacgtagttcgttttcaaccaccaata 27990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 666843 - 667037
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagcca---atgaaa--caaaaacaa 201  Q
    |||||||||||| |||||||||   ||  | |||||||||||||||||||||||||||||||||| |||| ||| | |||   || |||  ||||||||     
T  666843 caatcagtcccttaagcataaggtgtgccgaagggagctgaaaagagttaattacaatacagtaaggcta-aaacaaccataaatcaaaaacaaaaacag 666941  T
Q  202 acattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    ||||||||| |||| ||||||||||| |||  ||||||| || |||||| ||||||||||| | |||||   |||||| |||||||||||||||||    
T  666942 acattacaagacagtctgtaaacaacatagtagattttatctccaaaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccaccaata 667037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 301
Target Start/End: Original strand, 17227563 - 17227705
Alignment:
Q  159 tacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtc 258  Q
    ||||||||||||| |||| ||| ||||   |||||||||| ||||||||||  ||||||| |||||||| ||   | |||| ||| || | | |||||||    
T  17227563 tacaatacagtaaggctaaaaacagccgtagaaacaaaaagaaacattacacaacagcctctaaacaacataattggttttgcctccagaggggatagtc 17227662  T
Q  259 aaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
    |||||  || |||  ||||||||||||||||||||||||||||    
T  17227663 aaaattgaaagtaatgaagttcgctttcaaccaccaatacgtt 17227705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 29064171 - 29064204
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaa 171  Q
    ||||||||||||||||||||||||||||||||||    
T  29064171 agggagctgaaaagagttaattacaatacagtaa 29064204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 29119025 - 29119058
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaa 171  Q
    ||||||||||||||||||||||||||||||||||    
T  29119025 agggagctgaaaagagttaattacaatacagtaa 29119058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 297
Target Start/End: Complemental strand, 59039 - 58845
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagcca---atgaaa--caaaaacaa 201  Q
    |||||||||||||||||| |||   ||  | |||||||||||||||||||||||||||||||||| |||| ||| | |||   || |||  ||||||||     
T  59039 caatcagtccctcaagcacaaggtgtgccgaagggagctgaaaagagttaattacaatacagtaaggcta-aaacaaccataaatcaaaaacaaaaacag 58941  T
Q  202 acattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    ||||||||| |||| ||||||||||| || ||||||||  || |||||| ||||||||||| | || ||   |||||| |||||||||||||||||    
T  58940 acattacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaaagtgatgaagtttgctttcaaccaccaata 58845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 31423827 - 31423664
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaaagctagaaatagcca---atgaaaca-aaaacaaacattacaacacagcctgtaaacaacttaggg 233  Q
    |||||| |||||||||||||||||||||||| || |||| ||| | |||   || ||| | |||||| ||||||||  | || ||||||||||| ||  |    
T  31423827 agggaggtgaaaagagttaattacaatacagcaaggctaaaaacaaccataaatcaaaaacaaaacagacattacatgatagtctgtaaacaacataatg 31423728  T
Q  234 gattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    ||||||  || |||||| ||||||||||| | ||||| | |||||| |||||||||||||||||    
T  31423727 gattttgtctccaaaagggatagtcaaaagcgaacgtgctgaagtttgctttcaaccaccaata 31423664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 13099710 - 13099646
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaa 171  Q
    ||||||||||||||| ||||||   ||  | |||||| ||||||||||||||||||| |||||||    
T  13099710 caatcagtccctcaaacataaggtgtgccgaagggagttgaaaagagttaattacaacacagtaa 13099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 22298532 - 22298689
Alignment:
Q  144 ctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttacct 243  Q
    |||||||  |||| |||||||||||||| ||||  || ||| ||  ||||| || || ||||||||| |||| ||||||||||  ||  ||||||| |||    
T  22298532 ctgaaaaatgttagttacaatacagtaaggctaataacagcaaaaaaaacagaaccagacattacaaaacagtctgtaaacaaactaaaggatttttcct 22298631  T
Q  244 tcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
     ||| || ||||||||||||||||| |   | | ||||||||||||||||||||||||    
T  22298632 ccaatagggatagtcaaaatcaaacatgatgtaattcgctttcaaccaccaatacgtt 22298689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 301
Target Start/End: Complemental strand, 33937377 - 33937220
Alignment:
Q  144 ctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttacct 243  Q
    |||||||  |||| |||||||| ||||| ||||  || |||||| |||||| || || |||||||||  ||| ||||||||||  ||  |||||||  ||    
T  33937377 ctgaaaaatgttagttacaatatagtaaggctaagaacagccaaagaaacagaaccagacattacaaagcagtctgtaaacaagctaaaggattttttct 33937278  T
Q  244 tcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
     ||| || ||||||||||||| ||| |   | | ||||||||||||||||||||||||    
T  33937277 ccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaatacgtt 33937220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 20534505 - 20534472
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaa 171  Q
    |||||||||| |||||||||||||||||||||||    
T  20534505 agggagctgagaagagttaattacaatacagtaa 20534472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 38938140 - 38938173
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaa 171  Q
    ||||||||||||| ||||||||||||||||||||    
T  38938140 agggagctgaaaatagttaattacaatacagtaa 38938173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 27891277 - 27891471
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagcca---atgaaaca-aaaacaaa 202  Q
    |||||||||| |||||||||||   ||| | |||||| ||| ||||||||||||||| ||| ||| |||| ||| |||||   || ||| | |||||| |    
T  27891277 caatcagtccttcaagcataaggagtgtcgaagggagttgagaagagttaattacaacacattaaggctaaaaacagccataaatcaaaaataaaacaga 27891376  T
Q  203 cattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    |||||||  |||| | ||||||||  ||  |||||||  ||||||||| ||||||||||| | |||||   |||||| |||||||||||||||||    
T  27891377 cattacatgacagtccgtaaacaaagtaatggattttgtcttcaaaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccaccaata 27891471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 25907508 - 25907472
Alignment:
Q  140 ggagctgaaaagagttaattacaatacagtaaagcta 176  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25907508 ggagctgaaaagagttaattacaatacagtaaggcta 25907472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 8895042 - 8895128
Alignment:
Q  182 agccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaac 268  Q
    |||||| |||||| |||||||||||||||||||| ||| | ||||  ||   |||| | ||| |||||| |||||||||||||||||    
T  8895042 agccaaagaaacagaaacaaacattacaacacagtctgaatacaaaataaatgattattcctccaaaagggatagtcaaaatcaaac 8895128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 31963173 - 31963117
Alignment:
Q  245 caaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
    |||||| ||||||||||||||||| |   | | ||||||||||||||||||||||||    
T  31963173 caaaagggatagtcaaaatcaaacatgatgtaattcgctttcaaccaccaatacgtt 31963117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 24059323 - 24059416
Alignment:
Q  204 attacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaata 297  Q
    |||||| |||||| || ||||||| ||  ||||||| |||||||||| | |||||||| || ||||||  | ||||||||||||||||||||||    
T  24059323 attacatcacagcttgaaaacaacataaaggattttgccttcaaaaggggtagtcaaagtcgaacgtaatgtagttcgctttcaaccaccaata 24059416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 17839152 - 17839111
Alignment:
Q  138 agggagctgaaaagagttaattacaatacagtaaagctagaa 179  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  17839152 agggagctgaaaatagttaattacaatacagtaaggctagaa 17839111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 12915461 - 12915568
Alignment:
Q  194 aaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccacc 293  Q
    ||||||| ||||||||  ||||  ||||||||||  |  |||||||  || |||||| ||||||||||| | || |||  |||||| |||||||||||||    
T  12915461 aaaaacagacattacatgacagtttgtaaacaacaaaaaggattttgtctccaaaagtgatagtcaaaaacgaatgtaatgaagtttgctttcaaccacc 12915560  T
Q  294 aatacgtt 301  Q
    ||||||||    
T  12915561 aatacgtt 12915568  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 4303758 - 4303653
Alignment:
Q  190 aaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaac 289  Q
    ||||||||||| |||||||||  |||||||||||||||  |  |||||||  || |||||| |||| |||||||  ||||||  |||||  ||||||| |    
T  4303758 aaacaaaaacagacattacaaggcagcctgtaaacaacaaaatggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatc 4303659  T
Q  290 caccaa 295  Q
    ||||||    
T  4303658 caccaa 4303653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 15706116 - 15706011
Alignment:
Q  190 aaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaac 289  Q
    ||||||||||| |||||||||  |||||||||||||||  |  |||||||  || |||||| |||| |||||||  ||||||  |||||  ||||||| |    
T  15706116 aaacaaaaacagacattacaaggcagcctgtaaacaacaaaatggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatc 15706017  T
Q  290 caccaa 295  Q
    ||||||    
T  15706016 caccaa 15706011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 17839090 - 17839018
Alignment:
Q  190 aaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaa 262  Q
    ||||||||||| |||||||||  ||| ||||||||||| || ||||||||  || |||||| |||| ||||||    
T  17839090 aaacaaaaacagacattacaaggcagtctgtaaacaacataagggattttgtctccaaaagggataatcaaaa 17839018  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 5556846 - 5557037
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaa----- 201  Q
    ||||||||||||||||||||||   ||  | ||| |||||| |||||||||||||||||||| || |||| ||| | || || || |||||||||         
T  5556846 caatcagtccctcaagcataaggagtgccgaaggaagctgagaagagttaattacaatacagcaaggctaaaaacaacc-ataaaccaaaaacaaaacag 5556944  T
Q  202 acattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccacca 294  Q
    ||||||||  |||| ||||||||||  ||  |||||||  || |||||| ||||||||||| | |||||   |||||| ||||||||||||||    
T  5556945 acattacattacagtctgtaaacaatgtaacggattttgtctccaaaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccacca 5557037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 28521409 - 28521309
Alignment:
Q  107 caatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacatt 206  Q
    |||| ||||||| ||||| || || ||||| ||| |||||||||| || |||||||||||||||| |||| ||| | |||  ||||| ||||||||||||    
T  28521409 caattagtcccttaagcacaatacgtgttggaggaagctgaaaagtgtgaattacaatacagtaaggctataaacaaccatagaaacgaaaacaaacatt 28521310  T
Q  207 a 207  Q
    |    
T  28521309 a 28521309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 49369389 - 49369538
Alignment:
Q  144 ctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttacct 243  Q
    ||||||| ||||| |||||||||||||| |||||||| |||||   ||||||||||| | |||||||  ||| ||||||||||| ||  |||||||  ||    
T  49369389 ctgaaaatagttagttacaatacagtaaggctagaaa-agccaga-aaacaaaaacagagattacaaggcagtctgtaaacaacataatggattttgtct 49369486  T
Q  244 tcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaa 295  Q
     |||||| |||| ||||||  |||| ||  |||||| ||||||| |||||||    
T  49369487 ccaaaagggataatcaaaagtaaacataatgaagtttgctttcatccaccaa 49369538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 73964 - 74075
Alignment:
Q  190 aaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttaccttcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaac 289  Q
    |||| |||||| || |||||| |||| ||||||||||| || ||||||||  || |||||| ||||||||||| | |||||   | |||| |||||||||    
T  73964 aaaccaaaacagactttacaagacagtctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaac 74063  T
Q  290 caccaatacgtt 301  Q
    |||||| |||||    
T  74064 caccaaaacgtt 74075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 8542086 - 8542154
Alignment:
Q  108 aatcagtccctcaagcataagacatgttgtagggagctgaaaagagttaattacaatacagtaaagcta 176  Q
    ||||||||||||||||| |||   |||   ||||||||||||||||||||||||| |||||||| ||||    
T  8542086 aatcagtccctcaagcacaaggtgtgtcaaagggagctgaaaagagttaattacattacagtaaggcta 8542154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 301
Target Start/End: Complemental strand, 39633434 - 39633277
Alignment:
Q  144 ctgaaaagagttaattacaatacagtaaagctagaaatagccaatgaaacaaaaacaaacattacaacacagcctgtaaacaacttaggggattttacct 243  Q
    |||||||  |||| |||||  ||||||| || || ||||||||| |||||| || || |||||||||  |||  |||||||||  ||  ||||||| |||    
T  39633434 ctgaaaaatgttagttacacaacagtaaggcgaggaatagccaaagaaacataaccagacattacaaagcagtttgtaaacaaagtaaaggattttgcct 39633335  T
Q  244 tcaaaagagatagtcaaaatcaaacgtaccgaagttcgctttcaaccaccaatacgtt 301  Q
     ||| || ||||||||||||| ||| |   | | |||||||||||||||||| |||||    
T  39633334 ccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaaaacgtt 39633277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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