View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_9 (Length: 422)
Name: NF20165_low_9
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 16067317 - 16067732
Alignment:
| Q |
7 |
caatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctttcatggagaggttgaaa |
106 |
Q |
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| T |
16067317 |
caatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctttcatggagaggttgaaa |
16067416 |
T |
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| Q |
107 |
gtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggcggtgagattaacaaaat |
206 |
Q |
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| T |
16067417 |
gtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggcggtgagattaacaaaat |
16067516 |
T |
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| Q |
207 |
tacagcagcattatgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcatcgtcaatctaaata |
306 |
Q |
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| T |
16067517 |
tacagcagcattgtgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcaccgtcaatctaaata |
16067616 |
T |
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| Q |
307 |
tgcatttaattttatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctcatatgggctgatcaata |
406 |
Q |
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| T |
16067617 |
tgcatttagtttcatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctcatatgggctgatcaata |
16067716 |
T |
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| Q |
407 |
aatactaacttttgca |
422 |
Q |
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| T |
16067717 |
aatactaacttttgca |
16067732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 16072544 - 16072607
Alignment:
| Q |
81 |
aagagtctttcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagt |
144 |
Q |
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| T |
16072544 |
aagagtctttcatggagaggttgaaagtgaaatggagccaaggatgacttgccggtatattagt |
16072607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 16072647 - 16072717
Alignment:
| Q |
324 |
ccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctcatatg |
394 |
Q |
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| T |
16072647 |
ccggcaggtcatccttcggctatatttggctttcttcctttcatgtgagactctcgagaccttatcatatg |
16072717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 7873090 - 7873171
Alignment:
| Q |
219 |
atgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcatcgtcaatc |
300 |
Q |
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| T |
7873090 |
atgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtgattatgttaaactcaccgtcaatc |
7873171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 36862202 - 36862153
Alignment:
| Q |
222 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtggttca |
271 |
Q |
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| T |
36862202 |
attttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttca |
36862153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 34444341 - 34444297
Alignment:
| Q |
222 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtg |
266 |
Q |
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| T |
34444341 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtg |
34444297 |
T |
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