View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20166_high_11 (Length: 249)
Name: NF20166_high_11
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20166_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 2425807 - 2426040
Alignment:
| Q |
16 |
caagaacgttaggcacaagttcatcaaacaaacaaacaaacctacacttatctaccagcaatctagacagaatatccaagcacaaatttttagtattttg |
115 |
Q |
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| T |
2425807 |
caagaacgttaggcacaagttcatcaaacaaacaaacaattctacacttatctaccagcaatctagacagaatatccaagcacaaatttttagtattttg |
2425906 |
T |
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| Q |
116 |
agataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaaatgaaattgagaagtagatgat |
215 |
Q |
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| T |
2425907 |
agataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaaatgaaattgagaagtagatgat |
2426006 |
T |
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| Q |
216 |
aaaaataagttagaaagaaactcaactactgaat |
249 |
Q |
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| T |
2426007 |
aaaaataagttagaaagaaactcaactactgaat |
2426040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 22041622 - 22041387
Alignment:
| Q |
16 |
caagaacgttaggcacaagttcatcaaacaaacaaacaaacc----tacacttatctaccagcaatctagacagaatatccaagcacaaatttttagtat |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
22041622 |
caagaacattaggcacaagttcatcaaacaaacaaacaaaccaacctacacttatctaccaacaatctagacagaatatccaagcactaatttttagtat |
22041523 |
T |
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| Q |
112 |
tttgagataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaaatgaaattgagaagtaga |
211 |
Q |
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| T |
22041522 |
tttgagataaagaatgaacaaaagaaaaagcacccagaagtaaaatagcttcagagaataataaaacatgactattt-caaaatcaaattgcgaagtaga |
22041424 |
T |
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| Q |
212 |
tgataaaaataagttagaaagaaactcaactactgaa |
248 |
Q |
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| T |
22041423 |
tgataaaaataacttagaaagaaactcaactgctgaa |
22041387 |
T |
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