View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20166_high_7 (Length: 371)
Name: NF20166_high_7
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20166_high_7 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 28 - 371
Target Start/End: Complemental strand, 47782496 - 47782153
Alignment:
| Q |
28 |
gtttatgaagagagatcctctcaccttacaattaccttcgagaaaagtgttgttgatcatgggagttgggaagccagttttggtttgggttgatagaatt |
127 |
Q |
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| T |
47782496 |
gtttatgaagagagatcctctcaccttacaattaccttcgagaaaagtgttgttgatcatgggagttgggaagccagttttggtttgggttgatagaatt |
47782397 |
T |
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| Q |
128 |
gatatgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaatcttgaaattccagcaatagattgaagcaaaca |
227 |
Q |
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| T |
47782396 |
gatatgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaatcttgaaattccagcaatagattgaagcaaaca |
47782297 |
T |
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| Q |
228 |
atcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaaggtgattgattattactagga |
327 |
Q |
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| T |
47782296 |
atcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaaggtgattgattattactagga |
47782197 |
T |
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| Q |
328 |
cccggcgatgttccaacaacatacttactatgtgagtcaccatt |
371 |
Q |
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| T |
47782196 |
cccggcgatgttccaacaacatacttactatgtgagtcaccatt |
47782153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 296
Target Start/End: Complemental strand, 47788687 - 47788415
Alignment:
| Q |
29 |
tttatgaagagagatcctctcaccttacaattac--cttcgagaaaagtgttgttgatcatgggagttgggaagccagttttggtttgggttgatagaat |
126 |
Q |
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| T |
47788687 |
tttatgaagagagacactctcaccttacaattacaccttcgagaaaagtgttgatgatcatgggagatgcgaagccagttttgctttaggttgatagaat |
47788588 |
T |
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| Q |
127 |
tgatatgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgct---aaatcttgaaattccagcaatagattgaagca |
223 |
Q |
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| T |
47788587 |
tggtatgaagtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagca |
47788488 |
T |
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| Q |
224 |
aacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
296 |
Q |
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| T |
47788487 |
aacaatcatcacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttgatcactact |
47788415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 47778475 - 47778303
Alignment:
| Q |
117 |
ttgatagaattgatatgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactccta---ttgctaaatcttgaaattccagcaata |
213 |
Q |
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| T |
47778475 |
ttgatagaattgaaatgaagtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttctgtaata |
47778376 |
T |
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| Q |
214 |
gattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgttt |
286 |
Q |
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| T |
47778375 |
gactcattcaagcaattggcacattgtggaccagataaatcaggtgtacactgagcaagaccatatatagttt |
47778303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 47811820 - 47811730
Alignment:
| Q |
206 |
cagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
296 |
Q |
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| T |
47811820 |
cagcaatagattcattcaaacagtcatcacactgtgaaaccgacaaatcaggtgtacactgaacaagaccatttattgtttgatcactact |
47811730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 47745591 - 47745632
Alignment:
| Q |
247 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
288 |
Q |
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| T |
47745591 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
47745632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 47788418 - 47788367
Alignment:
| Q |
320 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatt |
371 |
Q |
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| T |
47788418 |
tactaggacccggcatttttcccacaacatacttacgatgtgagtcaccatt |
47788367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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