View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20166_low_1 (Length: 836)
Name: NF20166_low_1
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20166_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 16 - 830
Target Start/End: Complemental strand, 41921453 - 41920638
Alignment:
| Q |
16 |
gattgaagaatcaccaagtccttcttcagttgggaacgaaggttccgacatatccaaatgccatgatgaagaaggcgattgcttggataaagagaaagat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921453 |
gattgaagaatcaccaagtccttcttcagttgggaacgaaggttccgacatatccaaatgccatgatgaagaaggcgattgcttggataaagagaaagat |
41921354 |
T |
|
| Q |
116 |
gaagaagtggtttttcccaaacatgacatcgtagcagccgataaagaagagatacattccaacgccaagttctaacaagtgaatcctatttgatatttga |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921353 |
gaagaagtggtttttcccaaacatgacatcgtagcagccgataaagaagagatacattccaacgccaagttctaacaagtgaatcctatttgatatttga |
41921254 |
T |
|
| Q |
216 |
gaacaaagataacaaatgtaggtaagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921253 |
gaacaaagataacaaatgtaggtaagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgcc |
41921154 |
T |
|
| Q |
316 |
atccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttagattgcgatgctctaaatattaaaga |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41921153 |
atccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttaaattgcgatgctctaaatattaaaga |
41921054 |
T |
|
| Q |
416 |
ttgtgacacaatcatgattaaaaaactagttgaatgctaccaaataactaagacaatagtactgatttatacctgtcttcaatcctgaatcgaggcttct |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41921053 |
ttgtgacacaatcatgattaaaaaactagttgaatgctatcaaataactaagacaatagtactaatttatacctgtcttcaatcctgaatcgaggcttct |
41920954 |
T |
|
| Q |
516 |
tgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41920953 |
tgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagt |
41920854 |
T |
|
| Q |
616 |
tgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaa |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920853 |
tgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaa |
41920754 |
T |
|
| Q |
716 |
gttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgttacacagtagtagttaaaaaaggtatacattta |
814 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41920753 |
gttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgttacacagtagtagttgaaaaaggtatacattta |
41920654 |
T |
|
| Q |
815 |
aatacatattcttcga |
830 |
Q |
| |
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|||||||||| ||||| |
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|
| T |
41920653 |
aatacatattattcga |
41920638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 481 - 685
Target Start/End: Original strand, 26829762 - 26829966
Alignment:
| Q |
481 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
580 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
581 |
ttcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtg |
680 |
Q |
| |
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||||||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||| |||||||||| || |
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| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatg |
26829961 |
T |
|
| Q |
681 |
acctg |
685 |
Q |
| |
|
||||| |
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|
| T |
26829962 |
acctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 686
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
540 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
639 |
Q |
| |
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|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
|
| Q |
640 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
686 |
Q |
| |
|
| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 686
Target Start/End: Original strand, 26789245 - 26789451
Alignment:
| Q |
480 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
579 |
Q |
| |
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|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
580 |
attcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagt |
679 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||| ||||| |||| || ||| |||| ||| ||| ||||| |||| |||||||| | ||||| || | |
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|
| T |
26789345 |
attcactctactagtctctagcagaccaataattgttgcttttgttcgatgtagagctatggtattttcaaagagaacccaaaagataactaaatagaat |
26789444 |
T |
|
| Q |
680 |
gacctga |
686 |
Q |
| |
|
||||||| |
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|
| T |
26789445 |
gacctga |
26789451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 542 - 665
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
542 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
641 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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|
| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
|
| Q |
642 |
cattctcaaatagaatccaaaaga |
665 |
Q |
| |
|
||| ||||| |||| |||||||| |
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|
| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 26829252 - 26829412
Alignment:
| Q |
43 |
agttgggaacgaaggttccgacatatccaaatgccatgatgaagaaggcgattgcttggataaagagaaagatgaagaagtggtttttcccaaacatgac |
142 |
Q |
| |
|
|||||||||| || || || |||||||||||||||||||||||||| || | |||||||| | || || ||||||||||| ||||||||| |||| | |
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| T |
26829252 |
agttgggaacaaaagtgccaacatatccaaatgccatgatgaagaaagcaaacgcttggatgtataggaatatgaagaagtgatttttcccatacataag |
26829351 |
T |
|
| Q |
143 |
atcgtagcagccgataaagaagagatacattccaacgccaagttctaacaagtgaatccta |
203 |
Q |
| |
|
||| |||||||| |||| ||| || | |||||| |||||||||||| |||||||||| |
|
|
| T |
26829352 |
atcatagcagccacataagaggaggtagaatccaacaacaagttctaacatgtgaatccta |
26829412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 586
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
540 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
586 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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|
| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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