View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20166_low_2 (Length: 474)

Name: NF20166_low_2
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20166_low_2
NF20166_low_2
[»] chr3 (3 HSPs)
chr3 (225-467)||(519809-520051)
chr3 (5-227)||(513913-514135)
chr3 (107-156)||(51763736-51763785)
[»] chr4 (7 HSPs)
chr4 (225-467)||(366505-366747)
chr4 (20-207)||(371242-371422)
chr4 (234-402)||(529530-529698)
chr4 (25-152)||(21833562-21833689)
chr4 (104-152)||(1601177-1601225)
chr4 (17-56)||(532590-532629)
chr4 (103-151)||(53761152-53761200)
[»] chr8 (1 HSPs)
chr8 (19-154)||(18314886-18315021)
[»] chr1 (2 HSPs)
chr1 (16-63)||(9581450-9581497)
chr1 (16-63)||(9587021-9587068)
[»] chr5 (1 HSPs)
chr5 (104-154)||(41900804-41900854)
[»] chr6 (1 HSPs)
chr6 (89-142)||(6588601-6588654)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 225 - 467
Target Start/End: Original strand, 519809 - 520051
Alignment:
Q  225 atggctgtatttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctga 324  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  519809 atggctgtatttttcacgacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgagagtttgcggagaatttactcgctga 519908  T
Q  325 aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcctttctgttgnnnnnnngggtgga 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||    
T  519909 aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttgaatttccaggtacttttcctttctgttgtttttttgggtgga 520008  T
Q  425 tttcgcatgcctaaactacccttgatttttctctttcatctca 467  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  520009 tttcgcatgcctaaactacccttgctttttctctttcatctca 520051  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 513913 - 514135
Alignment:
Q  5 gtcacttgaataaccaattgcttttccacttgttcaaaaactgtaagcttcttcaagagcttatcatctttaatagctatcacataaccaatcaaggtat 104  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||| ||||||||    
T  513913 gtcacttggatgaccaatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtat 514012  T
Q  105 tgcttctgctctccgtcagagaccaacattgacctcttcatccttttccaccgactttcccaattatctgacttttacttcatgtttcattgactccttg 204  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||||||  ||| ||||||||||||||||||||||||||| |||    
T  514013 tgcttctgctctccgtgagagaccaacattgacctctatatccttttccgacgactttcccaacgatcagacttttacttcatgtttcattgactcgttg 514112  T
Q  205 ttgagtttcaagagtttgacatg 227  Q
    ||| |||| | ||||||||||||    
T  514113 ttgtgtttgatgagtttgacatg 514135  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 51763736 - 51763785
Alignment:
Q  107 cttctgctctccgtcagagaccaacattgacctcttcatccttttccacc 156  Q
    |||||||||||||| | |||||||||||||| |||| |||||||||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtctttatccttttccacc 51763785  T

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Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 225 - 467
Target Start/End: Complemental strand, 366747 - 366505
Alignment:
Q  225 atggctgtatttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctga 324  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||    
T  366747 atggctgtatttttcaggacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgagagtttgctgagaatttactcgttga 366648  T
Q  325 aattaacaccaataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcctttctgttgnnnnnnngggtgga 424  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||    
T  366647 aattaacaccaatactatgaaagacattactcgcttttgtaatgtctttgttgatttgaatttccaggtacttttcctttctgttgtttttttgggtgga 366548  T
Q  425 tttcgcatgcctaaactacccttgatttttctctttcatctca 467  Q
    ||| | |||||||||| ||||||| ||||||||||||||||||    
T  366547 ttttgtatgcctaaaccacccttgctttttctctttcatctca 366505  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 371422 - 371242
Alignment:
Q  20 aattgcttttccacttgttcaaaaactgtaagcttcttcaagagcttatcatctttaatagctatcacataaccaatcaaggtattgcttctgctctccg 119  Q
    |||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  371422 aattgcttttccacttgttcaaaaactgtaagc--------gaggttatcatctttaatagctatcacataaccaatcaaggtattgcttctgctctcct 371331  T
Q  120 tcagagaccaacattgacctcttcatccttttccaccgactttcccaattatc-tgacttttacttcatgtttcattgactccttgttg 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  371330 tcagagaccaacattgacctctttatccttttccaccgactttcccaatgatcttgacttttacttcatgtttcattgactccttgttg 371242  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 234 - 402
Target Start/End: Original strand, 529530 - 529698
Alignment:
Q  234 tttttcaggacggtgtgtgcttcacctctttagactacaaaaatgctcaacctgacccccttggagagtttgcagagaatttactcgctgaaattaacac 333  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||||||    
T  529530 tttttcaggacggtgtgtggttcacctctttagactacaaaaatgctcaacctgacccccttcgggagtttgctgagaatttagtcgctgaaattaacac 529629  T
Q  334 caataatatgaaagacattactcgcttttgtaatgtctttgttgatttaaatttccaggtacttttcct 402  Q
    |||||||||| |||||||||| |||||||||||||||| |||||||||  |||||||||||||||||||    
T  529630 caataatatggaagacattacccgcttttgtaatgtctatgttgatttggatttccaggtacttttcct 529698  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 21833562 - 21833689
Alignment:
Q  25 cttttccacttgttcaaaaactgtaagcttcttcaagagcttatcatctttaatagctatcacataaccaatcaaggtattgcttctgctctccgtcaga 124  Q
    |||||||||||| | || || |||||||||||| ||||| | ||||| ||| || |  |||| |||| ||   |||| |||||||| ||||||||| |||    
T  21833562 cttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctccgtgaga 21833661  T
Q  125 gaccaacattgacctcttcatccttttc 152  Q
    ||||||||||||  |||| |||||||||    
T  21833662 gaccaacattgagttctttatccttttc 21833689  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  104 ttgcttctgctctccgtcagagaccaacattgacctcttcatccttttc 152  Q
    ||||||||||||||||| |||||||||||||||  |||| |||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 532629 - 532590
Alignment:
Q  17 accaattgcttttccacttgttcaaaaactgtaagcttct 56  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  532629 accaatcgcttttccacttgttcaaaaattgtaagcttct 532590  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 53761152 - 53761200
Alignment:
Q  103 attgcttctgctctccgtcagagaccaacattgacctcttcatcctttt 151  Q
    |||||||||||||||||| | |||||||||||||| ||||  |||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtctttctcctttt 53761200  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 18314886 - 18315021
Alignment:
Q  19 caattgcttttccacttgttcaaaaactgtaagcttcttcaagagcttatcatctttaatagctatcacataaccaatcaaggtattgcttctgctctcc 118  Q
    |||| |||||||||||||||||| ||||||||||||||  |||||   ||||| ||| |  |  |||| ||||||||    |||||||||| ||||||||    
T  18314886 caatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctcc 18314985  T
Q  119 gtcagagaccaacattgacctcttcatccttttcca 154  Q
    || |||||||||| ||||  |||| |||| ||||||    
T  18314986 gtgagagaccaactttgaggtctttatccatttcca 18315021  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 9581497 - 9581450
Alignment:
Q  16 aaccaattgcttttccacttgttcaaaaactgtaagcttcttcaagag 63  Q
    ||||| ||||||||||||||||||||||| ||||| |||||| |||||    
T  9581497 aaccatttgcttttccacttgttcaaaaattgtaatcttcttgaagag 9581450  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 9587068 - 9587021
Alignment:
Q  16 aaccaattgcttttccacttgttcaaaaactgtaagcttcttcaagag 63  Q
    ||||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  9587068 aaccaatcgcttttccacttgttcaaaaattgtaatcttcttgaagag 9587021  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 41900804 - 41900854
Alignment:
Q  104 ttgcttctgctctccgtcagagaccaacattgacctcttcatccttttcca 154  Q
    |||||||||||||||| ||||||||||||||||  |||| ||| |||||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttcca 41900854  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 6588601 - 6588654
Alignment:
Q  89 taaccaatcaaggtattgcttctgctctccgtcagagaccaacattgacctctt 142  Q
    ||||||||  ||| |||||||||||||||||| ||||||||| |||||| ||||    
T  6588601 taaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtctt 6588654  T

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