View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20166_low_4 (Length: 403)
Name: NF20166_low_4
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20166_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Complemental strand, 2426417 - 2426015
Alignment:
| Q |
10 |
aagaatattagacaacattttgtttgtggaggaatggctaaagagaagttgtggtaacaaattcacctcagaaacctctcgtcacccc---------tct |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
2426417 |
aagaaaattagacaacattttgtttgtggaggaatggttaaagagaagttgtggtaacaaattcacctcagaaacctctcgtcaacccactacaacctct |
2426318 |
T |
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| Q |
101 |
gcgaaatccatcattcaagcatggtcccatctccgaaatacccttcaatcaacctcttcttcattcaatcaacaccatcttcaccaacatctcaatacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2426317 |
gcgaaatccatcattcaagcatggtcccatctccgaaacacccttcaatcaacctcttcttcattcaatcaacaccatcttcaccaacatctcaatacct |
2426218 |
T |
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| Q |
201 |
tacttaattctcaaacctctctccatgttgctgacccacaagcaaaacttctcctttccattctcacatcttcaaatttctctctttcccatcaatcttt |
300 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2426217 |
tactcaattctcaaacctctctccatgtcgctgacccacaagctaaacttctcctttccattctcacatcttcaaatttctctctttcccatcaatcttt |
2426118 |
T |
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| Q |
301 |
tcccctttgttttagacttctttacatatggataagaaaatccacaaaacccaccaaacaaacttttgatattgttgattcggtagttgagtttctttct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2426117 |
tcccctttgttttagacttctttacatatggataagaaaatccacaaaacccaccaaacaaacttttgatattgttgattcagtagttgagtttctttct |
2426018 |
T |
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| Q |
401 |
aac |
403 |
Q |
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||| |
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| T |
2426017 |
aac |
2426015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 22041017 - 22041410
Alignment:
| Q |
20 |
gacaacattttgtttgtggaggaatggctaaagagaagttgtggtaacaaattcacctcagaaacctctcgtc------------acc-cctctgcgaaa |
106 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | |||| ||||||||| || ||| ||||||| || |
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| T |
22041017 |
gacaacattttgttcgtggatgaatggctaaagagcagttgtggtaacaaatttaactcaaaaacctctcatcgatcaccctgctaccacctctgcaaag |
22041116 |
T |
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| Q |
107 |
tccatcattcaagcatggtcccatctccgaaatacccttcaatcaacctcttcttcattcaatcaacaccatcttcaccaacatctcaataccttactta |
206 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| | |
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| T |
22041117 |
tccatcattcaagcatggtcccatctatgaaacacccttcaatcaacctcttc---attcaatcaacaccatcttcaccaacatctcaaaactctactca |
22041213 |
T |
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| Q |
207 |
attctcaaacctctctccatgttgct-gacccacaagcaaaacttctcctttccattctcacatcttcaaatttctctctttcccatcaatcttttcccc |
305 |
Q |
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|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
22041214 |
attcccaaacctctctccatgttgcttgacctacaagcaaaacttctcctttccattctcacatcttcaaatttctctctttcccatgaatccttccccc |
22041313 |
T |
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| Q |
306 |
tttgttttagacttctttacatatggataagaaaatccacaaaacccaccaaacaaacttttgatattgttgattcggtagttgagtttctttctaa |
402 |
Q |
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|| |||||||||||||||||||||||| || ||||| | |||| ||||||||||||||||||||| ||| ||| | |||||||||||||||||| |
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| T |
22041314 |
ttcgttttagacttctttacatatggacaataaaataaaataaacttaccaaacaaacttttgatattattggttcagcagttgagtttctttctaa |
22041410 |
T |
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