View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20166_low_6 (Length: 384)

Name: NF20166_low_6
Description: NF20166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20166_low_6
NF20166_low_6
[»] chr6 (3 HSPs)
chr6 (21-351)||(34260261-34260601)
chr6 (123-356)||(34261873-34262115)
chr6 (143-251)||(6829712-6829823)
[»] chr8 (7 HSPs)
chr8 (42-293)||(42503538-42503793)
chr8 (143-251)||(17942733-17942844)
chr8 (138-218)||(38443917-38444000)
chr8 (111-222)||(11519765-11519879)
chr8 (166-220)||(12202836-12202890)
chr8 (166-220)||(12447264-12447318)
chr8 (42-77)||(17925456-17925491)
[»] chr3 (1 HSPs)
chr3 (42-235)||(29642916-29643113)
[»] scaffold0402 (1 HSPs)
scaffold0402 (143-356)||(10995-11208)
[»] chr4 (4 HSPs)
chr4 (143-295)||(36385535-36385680)
chr4 (178-226)||(39311122-39311170)
chr4 (178-226)||(24485509-24485557)
chr4 (264-329)||(36385904-36385974)
[»] chr7 (1 HSPs)
chr7 (143-251)||(5956673-5956784)
[»] chr1 (1 HSPs)
chr1 (143-251)||(2367266-2367377)
[»] chr2 (2 HSPs)
chr2 (190-227)||(34228833-34228870)
chr2 (269-325)||(29762100-29762156)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 34260601 - 34260261
Alignment:
Q  21 tataaaaaacagaacctctgcttaattttaatcaattcaaaatttgaaacaaccatt-cagcttcaggtggaattgttaaggctccagagctataaaatc 119  Q
    ||||||||| ||||||||  | ||||||||||| ||||||||||||||| ||||||| ||||| |||| |||||| | |||| | |||||||||||||||    
T  34260601 tataaaaaatagaacctcaacctaattttaatccattcaaaatttgaaataaccatttcagctccagggggaattttcaaggtttcagagctataaaatc 34260502  T
Q  120 accagtttttacaatcacttaacaatggcggtttgaagcggcggcg---gtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagca 216  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  34260501 accagtttttacaacaacttaacaatggcggtttgaagcggcggcgacggtgaaaagaaaagtttgactgaggatgatttaggggaggtgatgtggagca 34260402  T
Q  217 gaaggggaagagtgcgccgaacaaggaagggagagatgcagcggca---ggggcggcggtggcgatgggagggagagaggtgctatgggagaaggaagaa 313  Q
    ||||||||||||||||||  | ||||||||||||| ||  ||||||   |  |||||||||| ||||||||||||||| |||||||  ||||||||||||    
T  34260401 gaaggggaagagtgcgccataaaaggaagggagaggtgaggcggcaatggcagcggcggtggtgatgggagggagagatgtgctatctgagaaggaagaa 34260302  T
Q  314 tgagagtttgtacgcg---tgggatttgtatcataacagag 351  Q
     ||||||||| |||||   ||| ||||||||||||||||||    
T  34260301 ggagagtttgaacgcgcgttggcatttgtatcataacagag 34260261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 123 - 356
Target Start/End: Original strand, 34261873 - 34262115
Alignment:
Q  123 agtttttacaatcacttaacaatggcggtttgaagcggcggcg---gtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaa 219  Q
    |||||||||||  ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  34261873 agtttttacaacaacttaacaatggcggtttgaagcggcggcgacggtgaagagaaaagtttgactgaggatgagttaggggaggtgatgtggagcagaa 34261972  T
Q  220 ggggaagagtgcgccgaacaaggaagggagagatgcagcggca---ggggcggcggtggcgatgggagggagagaggtgctatgggagaaggaagaatga 316  Q
    ||| |||||||||||  | ||||||||||||| ||  ||||||   | ||||||| ||| ||||||||||||||| |||||||  |||||||||||| ||    
T  34261973 gggaaagagtgcgccagaaaaggaagggagaggtgaggcggcaacggtggcggcgatggtgatgggagggagagatgtgctatctgagaaggaagaagga 34262072  T
Q  317 gagtttgtacgcg---tgggatttgtatcataacagagtgcgt 356  Q
    |||||||||||||   ||| |||||||||||||||||| ||||    
T  34262073 gagtttgtacgcgcgttggcatttgtatcataacagagagcgt 34262115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 6829712 - 6829823
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    ||||| |||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||| || |||    
T  6829712 aatggtggtttgaagcggcggtggcggtgaagagaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgtcggaca 6829811  T
Q  240 aggaagggagag 251  Q
    ||| ||||||||    
T  6829812 agggagggagag 6829823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 42 - 293
Target Start/End: Original strand, 42503538 - 42503793
Alignment:
Q  42 ttaattttaatcaattcaaaatttgaaacaaccatt-cagcttcaggtggaattgttaaggctccagagctataaaatcaccagtttttacaatcactta 140  Q
    |||||||||||| ||||||||||||||||||||||| ||| |   | ||||||| |||||| | ||||||||||||||||||| ||||||||| || |||    
T  42503538 ttaattttaatccattcaaaatttgaaacaaccatttcaggtcttgatggaatttttaaggtttcagagctataaaatcaccattttttacaaccattta 42503637  T
Q  141 acaatggcggtttgaagcggcggc---ggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaa 237  Q
    |  ||||| ||||||||||||| |   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||     
T  42503638 atgatggcagtttgaagcggcgacaacggtgaagagaaaagtttgactgagaatgatttaggtgaggtgatgtggagcagaaggggaaaagtgtgccgat 42503737  T
Q  238 caaggaagggagagatgcagcggcaggggcggcggtggcgatgggagggagagagg 293  Q
      | | |||||||| ||| |||   | |||||||||| || |||||||||||||||    
T  42503738 ggatggagggagaggtgcggcgatggcggcggcggtgccggtgggagggagagagg 42503793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 17942733 - 17942844
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    |||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||| |||    
T  17942733 aatggcggtttgaagcggcggtggcggtgaagagaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccggaca 17942832  T
Q  240 aggaagggagag 251  Q
    ||| ||||||||    
T  17942833 agggagggagag 17942844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 38444000 - 38443917
Alignment:
Q  138 ttaacaatggcggtttgaagcggcggc---ggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcaga 218  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38444000 ttaacgatggcggtttgaagcggcggcagcggtgaagagaaaagtttgaccaaggatgatttaggtgaggtgatgtggagcaga 38443917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 11519765 - 11519879
Alignment:
Q  111 tataaaatcaccagtttttacaatcacttaacaatggcggtttgaagcggcggc---ggtgaagagaaaagtttgactgaggatgatttaggtgaggtga 207  Q
    ||||||||||||| || |||||| |||||||| ||| | |||||||||||||||   ||||||||||| |||||||| || ||| |||||||||||||||    
T  11519765 tataaaatcaccatttgttacaaccacttaacgatgacagtttgaagcggcggcagcggtgaagagaagagtttgaccgaagataatttaggtgaggtga 11519864  T
Q  208 tgtggagcagaaggg 222  Q
    ||||| ||| |||||    
T  11519865 tgtggtgcaaaaggg 11519879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 12202890 - 12202836
Alignment:
Q  166 gtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaag 220  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  12202890 gtgaagagaaatgtttgactgaggatgatttaggtgacatgatgtggagcagaag 12202836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 12447318 - 12447264
Alignment:
Q  166 gtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaag 220  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  12447318 gtgaagagaaatgtttgactgaggatgatttaggtgacatgatgtggagcagaag 12447264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 17925456 - 17925491
Alignment:
Q  42 ttaattttaatcaattcaaaatttgaaacaaccatt 77  Q
    |||||||||||| |||||||||||||||||||||||    
T  17925456 ttaattttaatccattcaaaatttgaaacaaccatt 17925491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 29642916 - 29643113
Alignment:
Q  42 ttaattttaatcaattcaaaatttgaaacaaccatt-cagcttcaggtggaattgttaaggctccagagctataaaatcaccagtttttacaatcactta 140  Q
    |||||||||||| ||||||||||||||||||||||| ||| |   ||||||||| |||||| | ||||||||||||||||| | ||||||||| || |||    
T  29642916 ttaattttaatccattcaaaatttgaaacaaccatttcaggtcttggtggaatttttaaggtttcagagctataaaatcacaattttttacaaccattta 29643015  T
Q  141 acaatggcggtttgaagcggcggc---ggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccg 235  Q
    |  ||||| | ||||||||||  |   | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||    
T  29643016 atgatggcagcttgaagcggcaacaacgatgaagagaaaagtttgactgagaatgatttaggtgaggtgatgtggagcagaaggggaaaagtgtgccg 29643113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 143 - 356
Target Start/End: Complemental strand, 11208 - 10995
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||| |||    
T  11208 aatggcggtttgaagcggtggtggcggtgaagagaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccggaca 11109  T
Q  240 aggaagggagagatgcagcggcaggggcggcggtggcgatgggagggagagaggtgctat-----gggagaaggaagaatgagagtttgt--acgcgtgg 332  Q
    ||| ||||||||  ||        |||||||||  |||||||||||||||||||||||||       |||||||||||| ||||||||||  ||||||||    
T  11108 agggagggagag--gc--------gggcggcggcagcgatgggagggagagaggtgctatctgagatgagaaggaagaaggagagtttgtacacgcgtgg 11019  T
Q  333 gatttgtatcataacagagtgcgt 356  Q
     |||| | ||||| ||||| ||||    
T  11018 tatttttctcatagcagagcgcgt 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 36385535 - 36385680
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    |||||||||||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||| ||||||||||  |||    
T  36385535 aatggcggtttgaagcggcggtggcggtgaagagaaaagtttgattgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccagaca 36385634  T
Q  240 aggaagggagagatgcagcggcaggggcggcggtggcgatgggagggagagaggtg 295  Q
    ||| |||||||| |          ||||||||| ||||||||||||||||||||||    
T  36385635 agggagggagaggt----------gggcggcggcggcgatgggagggagagaggtg 36385680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 39311122 - 39311170
Alignment:
Q  178 gtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaag 226  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  39311122 gtttgattaaggatgatttaggtgaggtgatgtggagcagaaggggaag 39311170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 24485509 - 24485557
Alignment:
Q  178 gtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaag 226  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  24485509 gtttgattaaggatgatttaggtgaggtgatgtggagcagaatgggaag 24485557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 36385904 - 36385974
Alignment:
Q  264 gggcggcggtggcgatgggagggagagaggtgctat-----gggagaaggaagaatgagagtttgtacgcg 329  Q
    ||||||||| ||||||||||||||||||||||||||       |||||||||||| |||||||||||||||    
T  36385904 gggcggcggcggcgatgggagggagagaggtgctatctgagatgagaaggaagaaggagagtttgtacgcg 36385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 5956784 - 5956673
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    ||||| |||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||| || |||    
T  5956784 aatggaggtttgaagcggcggtggcggtgaagagaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgacggaca 5956685  T
Q  240 aggaagggagag 251  Q
    ||| ||||||||    
T  5956684 agggagggagag 5956673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 2367266 - 2367377
Alignment:
Q  143 aatggcggtttgaagcggcgg---cggtgaagagaaaagtttgactgaggatgatttaggtgaggtgatgtggagcagaaggggaagagtgcgccgaaca 239  Q
    ||||| |||||||||||||||   |||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||| || |||    
T  2367266 aatggtggtttgaagcggcggtggcggtaaagagaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgtcggaca 2367365  T
Q  240 aggaagggagag 251  Q
    ||| ||||||||    
T  2367366 agggagggagag 2367377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 34228833 - 34228870
Alignment:
Q  190 atgatttaggtgaggtgatgtggagcagaaggggaaga 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34228833 atgatttaggtgaggtgatgtggagcagaaggggaaga 34228870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 29762100 - 29762156
Alignment:
Q  269 gcggtggcgatgggagggagagaggtgctatgggagaaggaagaatgagagtttgta 325  Q
    ||||||||||||  |||||||||||||||||  |||||||||||| ||| |||||||    
T  29762100 gcggtggcgatgtaagggagagaggtgctatctgagaaggaagaaggagggtttgta 29762156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University