View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_high_10 (Length: 226)
Name: NF20167_high_10
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31012404 - 31012616
Alignment:
| Q |
1 |
ttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgc |
100 |
Q |
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| T |
31012404 |
ttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgc |
31012503 |
T |
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| Q |
101 |
cacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagacc |
200 |
Q |
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| T |
31012504 |
cacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagacc |
31012603 |
T |
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| Q |
201 |
ttgatcaaaatct |
213 |
Q |
| |
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||||||||||||| |
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| T |
31012604 |
ttgatcaaaatct |
31012616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 15523395 - 15523205
Alignment:
| Q |
23 |
tccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgccacaataacaaagatactacca |
122 |
Q |
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| T |
15523395 |
tccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccacca |
15523296 |
T |
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| Q |
123 |
ttttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatct |
213 |
Q |
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| T |
15523295 |
ttctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatct |
15523205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 30958619 - 30958808
Alignment:
| Q |
24 |
ccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgccacaataacaaagatactaccat |
123 |
Q |
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| T |
30958619 |
ccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaaccattttaccttaactgtaaggaaaataacatcactaccat |
30958718 |
T |
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| Q |
124 |
tttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatct |
213 |
Q |
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| T |
30958719 |
tctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaactaaaaagaacagaccttgatcaaaatct |
30958808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 31001875 - 31002053
Alignment:
| Q |
24 |
ccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgccacaataacaaagatactaccat |
123 |
Q |
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| T |
31001875 |
ccaacatctcttatccattctggggaaaaaatcgtccttctcactgcggcgcgggccatcatttttaccttaactgccacgaagacaatattactaccat |
31001974 |
T |
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| Q |
124 |
tttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagacctt |
202 |
Q |
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| T |
31001975 |
tctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacctt |
31002053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 31221672 - 31221839
Alignment:
| Q |
35 |
tatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgccacaataacaaagatactaccattttgttatact |
134 |
Q |
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|||||||| |||||| |||||||||| | || ||||| || |||||||||| | ||||| |||||||||| |||| |||||||||| | |||| | |
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| T |
31221672 |
tatccattttggggacaaaatcgtccgtatcgctgtggcgccggcaacccgttttaccttaactgccacaacaacagtattactaccattctattatcat |
31221771 |
T |
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| Q |
135 |
cacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagacctt |
202 |
Q |
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||||||| |||||||||||||| || ||| | ||| |||||||| ||||| || |||||||||||| |
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| T |
31221772 |
cacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctt |
31221839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 15493092 - 15493157
Alignment:
| Q |
19 |
tatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaaccc |
84 |
Q |
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| T |
15493092 |
tatctccaacatctcttatccattctggggacaaagtcgtcctctttactgtggtgctcgcaaccc |
15493157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 30664099 - 30664014
Alignment:
| Q |
128 |
ttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatct |
213 |
Q |
| |
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|||||||||||||| |||| |||||| | || |||| | ||| |||| ||| |||||||||||||||||||||||||||||||| |
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| T |
30664099 |
ttatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatct |
30664014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 15493364 - 15493395
Alignment:
| Q |
182 |
aaactcaaaagaacagaccttgatcaaaatct |
213 |
Q |
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| T |
15493364 |
aaactcaaaagaacagaccttgatcaaaatct |
15493395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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