View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_high_2 (Length: 423)
Name: NF20167_high_2
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 41087826 - 41087434
Alignment:
| Q |
13 |
aatatatttataaaatgtgtgataaaaataaaaactttcattatatatacgaacacgagtaattacatgtaaagtgagctggtattagtatccacaagtt |
112 |
Q |
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| T |
41087826 |
aatatatttataaaatgtgtgataaaaataaaaactttcattatatatacgaacacgagtaattacatgtaaagtgagctggtattagtatccacaagtt |
41087727 |
T |
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| Q |
113 |
tgattcgatatatagatatttttctcaacagtaagcatgagaattgaggacgagtgctatttgagaaagactagaatgagtattattatttgaggccatt |
212 |
Q |
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| T |
41087726 |
tgattcgatatatagatatttttctcaacagtaagcatgagaattgaggacgagtgctatttgagaaagactagaatgagtattattatttgaggccatt |
41087627 |
T |
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| Q |
213 |
ttaannnnnnnngtttaacaatcctcctattccgattgaaagtggattttgatgattcgaaattgtacctgaatatgagtaaaatatggcacaaaaatgt |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41087626 |
ttaattttttttgtttaacaatcctcctattccgattgaaagtggattttgatgattcgaaattttacctgaatatgagtaaaatatggcacaaaaatgc |
41087527 |
T |
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| Q |
313 |
ttaaccattaaccaataacaaattacatcatgtataacgttgaaggtataataatacgattagatcagattggttgacatgtatatatagacg |
405 |
Q |
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| T |
41087526 |
ttaaccattaaccaataacaaattacatcatgtataacgttgaaggtataataatacgattagatcagattggttgacatgtatatatagacg |
41087434 |
T |
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