View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_high_4 (Length: 383)
Name: NF20167_high_4
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 8910361 - 8910010
Alignment:
| Q |
13 |
tcattgaagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggttaa |
112 |
Q |
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| T |
8910361 |
tcattgaagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggtta- |
8910263 |
T |
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| Q |
113 |
ttattcctccagtgtggcgaaccacgggttgaactttgttgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgag |
212 |
Q |
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| T |
8910262 |
---ttcctccagtgtggcgaaccacgagttgaactttgtcgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgag |
8910166 |
T |
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| Q |
213 |
aagaccaatgagttcatccaaaataagtttcatccaaatatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaa |
312 |
Q |
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| T |
8910165 |
aagaccaatgagttcatccaaaataagtttcatccaaatatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaa |
8910066 |
T |
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| Q |
313 |
agaagttgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatact |
368 |
Q |
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| T |
8910065 |
agaagttgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatact |
8910010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 15165256 - 15165298
Alignment:
| Q |
288 |
tcaactgatttgagctaagagttaaagaagttgaaaaagttaa |
330 |
Q |
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| T |
15165256 |
tcaactgatttgagcttagagttaacgaagttgaaagagttaa |
15165298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 11660575 - 11660546
Alignment:
| Q |
286 |
gttcaactgatttgagctaagagttaaaga |
315 |
Q |
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| T |
11660575 |
gttcaactgatttgagctaagagttaaaga |
11660546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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