View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20167_high_6 (Length: 273)

Name: NF20167_high_6
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20167_high_6
NF20167_high_6
[»] chr1 (5 HSPs)
chr1 (86-263)||(17187491-17187682)
chr1 (181-252)||(26656676-26656747)
chr1 (1-39)||(17187729-17187767)
chr1 (113-185)||(26656590-26656662)
chr1 (117-185)||(1696109-1696177)
[»] chr8 (2 HSPs)
chr8 (184-252)||(12795573-12795641)
chr8 (181-255)||(11766883-11766957)
[»] chr2 (1 HSPs)
chr2 (184-270)||(24727027-24727113)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 17187682 - 17187491
Alignment:
Q  86 gcaaaaagaaaagaaacatcatgcctggctacactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttt---- 181  Q
    ||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||        
T  17187682 gcaaaaagagaagaaacatcatgtctggctgcactttaagtgtactgagctttatatccatttactacccctagagtttgtgtatacactatcttttgta 17187583  T
Q  182 ----------tgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgttgatgttgt 263  Q
              |||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||| |||||||||||||| ||||||    
T  17187582 aacaacttgttgtatctttggattgagaatagaaagtcctctaggttgaggcaaggaaatgtagggaaaggttgtcttagtgttgttgttgt 17187491  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 26656676 - 26656747
Alignment:
Q  181 ttgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagt 252  Q
    |||||||| ||||||||||||||| ||||||||| | || ||||||||||| ||||| ||| ||||||||||    
T  26656676 ttgtatctctggattgagaataggtagtcctctaggttgaggcaaggaaatatagggcaaggttgtcttagt 26656747  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17187767 - 17187729
Alignment:
Q  1 atactacatttaagcttacatataaagtctgacatgttc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17187767 atactacatttaagcttacatataaagtctgacatgttc 17187729  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 26656590 - 26656662
Alignment:
Q  113 gctacactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttttgta 185  Q
    |||||| | ||||| |||||| ||| ||||| | ||||||| ||||||||||||||| | |||||||||||||    
T  26656590 gctacaatctaagtgtactgatcttcatatctatttactactcctagagtttgtgtaaagactatcttttgta 26656662  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 1696177 - 1696109
Alignment:
Q  117 cactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttttgta 185  Q
    |||||||||| || || |||| |||||   ||||||| |||||||||| |||| |||||||||||||||    
T  1696177 cactttaagtgtattgtgcttcatatctgtttactactcctagagtttatgtaaacactatcttttgta 1696109  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 12795641 - 12795573
Alignment:
Q  184 tatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagt 252  Q
    |||||||||||| ||| |||||||||||||| | || ||||||||||| ||||| ||| ||||||||||    
T  12795641 tatctttggatttagattaggaagtcctctaggttgaggcaaggaaatctagggcaaggttgtcttagt 12795573  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 11766957 - 11766883
Alignment:
Q  181 ttgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgtt 255  Q
    |||||||| |||||||||||||||||||| | || | || ||||||||||| ||||   ||||||||||||||||    
T  11766957 ttgtatctctggattgagaataggaagtcttttaggttgaggcaaggaaatctaggacgagattgtcttagtgtt 11766883  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 24727113 - 24727027
Alignment:
Q  184 tatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgttgatgttgttgatgat 270  Q
    ||||||||| |||| | |||||||||||||| | || ||||||||||| || |  |||| ||||||||| ||| ||||||| |||||    
T  24727113 tatctttggtttgatattaggaagtcctctaggttgaggcaaggaaatctaagacaagaatgtcttagtattgttgttgttcatgat 24727027  T

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