View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_high_7 (Length: 268)
Name: NF20167_high_7
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 13462224 - 13462476
Alignment:
| Q |
18 |
ataacaacatatatttacccattcttgctttnnnnnnnta---catatatttacccattaaagccattaatttcattcactaaacaaaattcatttcttc |
114 |
Q |
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| T |
13462224 |
ataacaacatatatttacccattctttctttaaaaaaataatacatatatttacccattaaagccattaatttcattcactaaacaaaattcagttctcc |
13462323 |
T |
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| Q |
115 |
atgttgtttttgtgttattttacttatagagagaacacactat---atttttata--------nnnnnnnagtgttaacccttcgtttccaagaagaaat |
203 |
Q |
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| T |
13462324 |
atgttgtttttgtgttattttacttatagagagaacacactataaaatttttatatttttccttttttttagtgttaacccttcgtttccaagaaaaaat |
13462423 |
T |
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| Q |
204 |
gaactctgacaatctgaagttgagacataaggtaagaatagcctgatcatatt |
256 |
Q |
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| T |
13462424 |
aaactctgacaatctgaagttgagacataaggtaagaatagcctgatcatatt |
13462476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 31291042 - 31291137
Alignment:
| Q |
57 |
acatatatttacccattaaagccattaatttcattcactaaacaaa---attcatttcttcatgttgtttttgtgttattttacttatagagagaaca |
151 |
Q |
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| T |
31291042 |
acatgtatttacccattaaagccattgatttcattcactaaaaaaagccattcatttctccgtgttg--tttgtgttaatttacttttagagagaaca |
31291137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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