View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_high_9 (Length: 238)
Name: NF20167_high_9
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 52558556 - 52558776
Alignment:
| Q |
18 |
catgtaaagcatgactcaccttacactgcttcattaggcactgcatttgattaccttgagactgttctctccaaatatgatcaaggacctttcttccttg |
117 |
Q |
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| T |
52558556 |
catgtaaagcatgactcaccttacactgcttcattaggcactgcatttgattaccttgagactgttctctccaaatatgatcacggacctttcttccttg |
52558655 |
T |
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| Q |
118 |
gccaattcagtctggtgagtatacttatattgatttgtagcaatggcaatgcatagtatactcttcttgtgcgttttcacaattaaattgaacttgtcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52558656 |
gccaattcagtctggtgagtatacttatattgatttgtagcaatggcaatgcatagtatactcttcttgtgcgttttcacaattaaattgaacttgtcaa |
52558755 |
T |
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| Q |
218 |
agttttctattaatttcaggt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
52558756 |
agttttctattaatttcaggt |
52558776 |
T |
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