View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20167_low_1 (Length: 545)

Name: NF20167_low_1
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20167_low_1
NF20167_low_1
[»] chr3 (10 HSPs)
chr3 (131-530)||(10891167-10891569)
chr3 (131-530)||(11157826-11158225)
chr3 (131-530)||(11146660-11147062)
chr3 (131-530)||(8863147-8863549)
chr3 (131-530)||(11128835-11129237)
chr3 (131-291)||(11244674-11244834)
chr3 (230-312)||(10530610-10530692)
chr3 (230-312)||(10679401-10679483)
chr3 (253-362)||(10033986-10034095)
chr3 (226-311)||(13397442-13397527)
[»] chr7 (1 HSPs)
chr7 (181-309)||(29838551-29838679)
[»] chr4 (1 HSPs)
chr4 (131-312)||(17850950-17851131)
[»] chr6 (1 HSPs)
chr6 (181-213)||(31677862-31677894)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 131 - 530
Target Start/End: Original strand, 10891167 - 10891569
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10891167 ccaattcttcatttcaaccttttccgtcccttgagaatttatattttaataacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 10891266  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgtatataatggt 330  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10891267 ttttccttgtcttaaatctctgaagttatataactgtcctgaactgaggggaaatttgccaaaccatctttcttccatagaaagatttgtatataatggt 10891366  T
Q  331 tgtcctcatcttttggaatcaccacctactcttgaatggc---cctcaataaaagaaatagatatttcgggagatttacattctacagataatcaatggc 427  Q
    |||| || | ||||||||||||||||||||||||||||||   ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10891367 tgtcgtcgtattttggaatcaccacctactcttgaatggccctcctcaataaaagttatagatatttcgggagatttacattctacagataatcaatggc 10891466  T
Q  428 cgtttgttgagaatgatttgccttgtctactgcaatgggtatcggtaagtttctttgatagaatattctcccttccccaaatgattttgagcagcacatg 527  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  10891467 cgtttgttgagaatgatttgccttgtctactgcaacgggtatcggtacgtttgtttgatacaatattctcccttccccaaatgattttgagcagcacatg 10891566  T
Q  528 tct 530  Q
    |||    
T  10891567 tct 10891569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 131 - 530
Target Start/End: Complemental strand, 11158225 - 11157826
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11158225 ccaattcttcatttcaaccttttccatcccttaagaatttatactttgataacatgccaaattggaagaaatggcttccctttcaagatggcatgtttcc 11158126  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgtatataatggt 330  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  11158125 ttttccttgtcttaaaactctgattttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaacatttgtatataaaggt 11158026  T
Q  331 tgtcctcatcttttggaatcaccacctactcttgaatggccctcaataaaagaaatagatatttcgggagatttacattctacagataatcaatggccgt 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  11158025 tgtcctcgtcttttggaatcaccacctactcttgaatggccctcaataaaagctatagatatttcgggagatttacattctacaaataatcaatggccgt 11157926  T
Q  431 ttgttgagaatgatttgccttgtctactgcaatgggtatcggtaagtttctttgatagaatattctcccttccccaaatgattttgagcagcacatgtct 530  Q
    ||||| ||| ||||||||||||||| ||||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  11157925 ttgttcagagtgatttgccttgtcttctgcaatcggtatcagtatgtttctttgatacaatgttctcccttccccaaatgattttgagcagcacatgtct 11157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 131 - 530
Target Start/End: Complemental strand, 11147062 - 11146660
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    |||||||||||||||||||||||||||| ||| |||| ||  | |||   || |||||||||||||||||||||||||||||||||||||||||||||||    
T  11147062 ccaattcttcatttcaaccttttccatcgcttgagaagttgcaatttgtgaaaatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 11146963  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgtatataatggt 330  Q
    |||||||||||||||| |||||   |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  11146962 ttttccttgtcttaaatctctgattttatataactgtcccgaactgaggggaaatttgcctaatcatctttcttccatagaaacatttgtatatcatggt 11146863  T
Q  331 tgtcctcatcttttggaatcaccacctactcttgaatggc---cctcaataaaagaaatagatatttcgggagatttacattctacagataatcaatggc 427  Q
    ||||||| |||||| |||| ||||||||||||||||||||   ||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||    
T  11146862 tgtcctcgtctttttgaattaccacctactcttgaatggccctcctcaataaaagctatagatatttggggagatttacattctacaaataatcaatggc 11146763  T
Q  428 cgtttgttgagaatgatttgccttgtctactgcaatgggtatcggtaagtttctttgatagaatattctcccttccccaaatgattttgagcagcacatg 527  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11146762 cgtttgttgagagtgatttgccttgtctactgcaatcggtatcggtatatttctttgatacaatattctcccttccccaaatgattttgagcagcacatg 11146663  T
Q  528 tct 530  Q
    |||    
T  11146662 tct 11146660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 131 - 530
Target Start/End: Original strand, 8863147 - 8863549
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    |||||||||||||||| ||||||||||||||| |||| ||  | ||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8863147 ccaattcttcatttcatccttttccatcccttgagaagttggaatttacgaacatgccaaattggaagaaatggcttccctttcaagatggcatacttcc 8863246  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgtatataatggt 330  Q
    ||||||||||||||||||||||  ||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||  | |  ||    
T  8863247 ttttccttgtcttaaaactctgatgttatgtgattgtcctgaactgaggggaaatttgcctaaccatctttcttccattgaagcatttgtaattgaatgt 8863346  T
Q  331 tgtcctcatcttttggaatcaccacctactcttgaatggc---cctcaataaaagaaatagatatttcgggagatttacattctacagataatcaatggc 427  Q
    ||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  8863347 tgtcctcatctgttggaatcaccacctactcttgaatggctctcctcaataaaagaaatagatatttcgggagatttacattcttcagagactcaatggc 8863446  T
Q  428 cgtttgttgagaatgatttgccttgtctactgcaatgggtatcggtaagtttctttgatagaatattctcccttccccaaatgattttgagcagcacatg 527  Q
    |||||||||||| ||| | ||| |||||||||||||||||| |  || |||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||    
T  8863447 cgtttgttgagagtgactcgccatgtctactgcaatgggtaacactacgtttttttgatacaatattctctcttcccaaaatgattttgagcagcacttg 8863546  T
Q  528 tct 530  Q
    |||    
T  8863547 tct 8863549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 131 - 530
Target Start/End: Complemental strand, 11129237 - 11128835
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    ||||||||||||||||||||||| | |||||| |||| ||  | ||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11129237 ccaattcttcatttcaacctttttcgtcccttgagaagttggaatttacgaacatgccaaattggaagaaatggcttctctttcaagatggcatacttcc 11129138  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgtatataatggt 330  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||  ||||||| |||| |||    
T  11129137 ttttccttgtcttaaatctctgaagttatatgactgtactgaactgaggggaaatttgcctagccatctctcttccatagaagaatttgtaaataaaggt 11129038  T
Q  331 tgtcctcatcttttggaatcaccacctactcttgaatggc---cctcaataaaagaaatagatatttcgggagatttacattctacagataatcaatggc 427  Q
    ||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||  |||| |||||||||| | || |||||    
T  11129037 tgtcctcatctgttggaatcaccacctactcttgaatggctctcctcaataaaagaaatagatttttcgggaagtttagattctacagagactcgatggc 11128938  T
Q  428 cgtttgttgagaatgatttgccttgtctactgcaatgggtatcggtaagtttctttgatagaatattctcccttccccaaatgattttgagcagcacatg 527  Q
    |||||||||||| |||||  || |||||||||||||| ||| |  |  |||||||||||| ||||||||| |||||| ||||||||||||||||||| ||    
T  11128937 cgtttgttgagagtgattccccatgtctactgcaatgtgtagccctgcgtttctttgatacaatattctctcttcccaaaatgattttgagcagcacttg 11128838  T
Q  528 tct 530  Q
    |||    
T  11128837 tct 11128835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 131 - 291
Target Start/End: Complemental strand, 11244834 - 11244674
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    ||||||||||||| ||||| |||||||| ||| |||| ||  | ||| | |||||| ||||||||||| |||||||  | ||||| |||  |||||||||    
T  11244834 ccaattcttcattccaaccgtttccatctcttgagaagttgaagtttgagaacatgtcaaattggaaggaatggctaacttttcatgatcacatatttcc 11244735  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcct 291  Q
    ||| ||| ||||||||||| || |||| | ||| |||||||||||||||||||||||||||    
T  11244734 tttccctcgtcttaaaactatgaagttttctaattgtcctgaactgaggggaaatttgcct 11244674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 10530610 - 10530692
Alignment:
Q  230 cttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaa 312  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||| | |||||| |||| |||| ||| || ||||||||||||    
T  10530610 cttttccatgtcttaaaactcttgagttatataattgtccagaatttaggggacattttcctagccacctatcttccatagaa 10530692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 10679401 - 10679483
Alignment:
Q  230 cttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaa 312  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||||| ||| || |||| || | ||| || ||||||||||||    
T  10679401 cttttccatgtcttaaaactcttgagttatataattgtccagaacttaggcgacattttcccagccacctatcttccatagaa 10679483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 10033986 - 10034095
Alignment:
Q  253 gagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaaagatttgt-atataatggttgtcctcatcttttggaatca 351  Q
    ||||||||||| ||||| ||||| |||||| ||||||| | | | ||| |||||||||||| | |||| |||| | |||||| ||||||| |||||| ||    
T  10033986 gagttatataattgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatca-ggttgttctcatctattggaaaca 10034084  T
Q  352 ccacctactct 362  Q
    ||| |||||||    
T  10034085 ccatctactct 10034095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 13397442 - 13397527
Alignment:
Q  226 tttccttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccataga 311  Q
    |||||||||||| ||||||||||||||  | |     ||||| |||||||||||||| |||||||||  |||||| ||||||||||    
T  13397442 tttccttttcctcgtcttaaaactctgatgcttagggactgtactgaactgaggggacatttgcctagtcatcttccttccataga 13397527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 29838551 - 29838679
Alignment:
Q  181 aacatgccaaattggaagaaatggcttccctttcaagatggcatatttccttttccttgtcttaaaactctggagttatataactgtcctgaactgaggg 280  Q
    |||||| ||| ||||||| |||||||||||||| |||  |||| | ||||||||||||||||  ||||||||  |||| | || ||| |||||||||| |    
T  29838551 aacatgtcaagttggaaggaatggcttccctttgaaggaggcaaacttccttttccttgtctccaaactctgaggttacagaagtgttctgaactgagag 29838650  T
Q  281 gaaatttgcctaaccatctttcttccata 309  Q
    || ||||||| ||||||||| ||||||||    
T  29838651 gacatttgcccaaccatcttccttccata 29838679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 312
Target Start/End: Complemental strand, 17851131 - 17850950
Alignment:
Q  131 ccaattcttcatttcaaccttttccatcccttaagaatttatattttaaaaacatgccaaattggaagaaatggcttccctttcaagatggcatatttcc 230  Q
    |||||||||| |||||||| ||||| |||||| ||  ||||   |||   |||||||||||||||||| ||||||||||||||  ||    ||  ||| |    
T  17851131 ccaattcttcctttcaaccatttccgtcccttgagtgtttaatgtttcgcaacatgccaaattggaaggaatggcttccctttgtaggcatcaattttgc 17851032  T
Q  231 ttttccttgtcttaaaactctggagttatataactgtcctgaactgaggggaaatttgcctaaccatctttcttccatagaa 312  Q
    ||||||| ||||||||| ||||   |||| ||| |||||| |||| |||||  |||| |||| ||| |||||||| ||||||    
T  17851031 ttttcctcgtcttaaaattctgattttatctaattgtcctaaacttagggggtatttccctagccacctttcttcaatagaa 17850950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 31677894 - 31677862
Alignment:
Q  181 aacatgccaaattggaagaaatggcttcccttt 213  Q
    |||||||||||||||||| ||||||||||||||    
T  31677894 aacatgccaaattggaaggaatggcttcccttt 31677862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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