View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_10 (Length: 250)
Name: NF20167_low_10
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 52559002 - 52558765
Alignment:
| Q |
13 |
aatatgttaccatgaaacgaccttgattcaacgacaggtagatttcccatatcatgacatattttctcaataactgtaataagcatacacaaataaataa |
112 |
Q |
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| T |
52559002 |
aatatgttaccataaaacgaccttgattcaacgacaggtagatttcccatatcatgacatattttctcaataactgtaataagcatacacaaataaataa |
52558903 |
T |
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| Q |
113 |
tattttactgtatgctctacctcaatccatgctgtcagtctaggcctgcccactgtaatgtcataatttttcacatccattaaaaacggttgaaatcttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52558902 |
tattttactgtatgctctacctcaatccatgctgtcagtctaggcctgcccactgtaatgtcataatttttcacatccattaaaaacggttgaaatcttt |
52558803 |
T |
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| Q |
213 |
ccatgaaaggagcatatgttatatccacctgaaattaa |
250 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
52558802 |
ccatgaaaggagcatatgctatatccacctgaaattaa |
52558765 |
T |
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