View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_2 (Length: 522)
Name: NF20167_low_2
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 42432665 - 42432420
Alignment:
| Q |
9 |
agcagagagagtccacgttatttagaaagagaagtcacacacaaaaacaaaaccactgtgaagctgaaaagaaatcaaagaagaatccaaatccaaaccg |
108 |
Q |
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| T |
42432665 |
agcagagagagtccacgttatttagaaagagaagtcacacacaaaaacaaaaccactgtgaagctgaaaagaaatcaaagaagaatccaaatccaaaccg |
42432566 |
T |
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| Q |
109 |
aacccgaatattaacatcctcaattcctcatcccaaacaaacacatcaaaatcaccacacttattccttttgacctctttcataatacacccccttccac |
208 |
Q |
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| T |
42432565 |
aacccgaatattaacatcctcaattcctcatcccaaacaaacacatcaaaatcacaacacttgttccttttgacctctttcataatacacccccttccac |
42432466 |
T |
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| Q |
209 |
cctctattttctccttcccaatccataatggatttaaccctaaccc |
254 |
Q |
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| T |
42432465 |
cctccattttctccttcccaattcataatggatttaaccataaccc |
42432420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 325 - 522
Target Start/End: Complemental strand, 42432349 - 42432152
Alignment:
| Q |
325 |
ccacctcgtttgaaattgaaatgtccccaccgttacaaccactaacaaatctcaatctcccttccttacctgatcttttactaactgcactctccgtttg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42432349 |
ccacctcgtttgaaattgaaatgtccccaccgttacaaccactaacaaatctcaatctcccttccttacctgatcttttactaactgcactctccgtttg |
42432250 |
T |
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| Q |
425 |
cttccttttcacctcctcaagatctcacaacacccccacaacaacaaactgtcctttcctctctttccctctcaaaccacgtcgtttcctcaaaatcc |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42432249 |
cttccttttcacctcctcaagatctcacaacacccccacaacaacaaactgtcctttcctctctttccctctcaaaccacgtcgtttcctcaaaatcc |
42432152 |
T |
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