View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_4 (Length: 408)
Name: NF20167_low_4
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_4 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 40782728 - 40783123
Alignment:
| Q |
1 |
ttctttaacctccttttaatttttcagcgccaaaggaagcaaatgggccaacacaaatcatgtgtcgtggaagtgtgttagggagcttcagggacccatt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40782728 |
ttctttaacatccttttaatttttcagcgccaaaggaagcaaatgggccaacacaaatcatgtgtcgtggaagtgtgttagggagcttcagggacccatt |
40782827 |
T |
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| Q |
101 |
taaacactgtgcttttattgcaatttggggcttcttgtgagtatcactgtgctatggcctatatggtagataatggacgatggggtcgaccatcttcacg |
200 |
Q |
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| T |
40782828 |
taaacactgtgcttttattgcaatttggggcttcttgtgagtatcactgtgctatggcctatatggtagataatggatgatggggtcgaccatcttcacg |
40782927 |
T |
|
| Q |
201 |
tgaccaccttcttcactatattgcctttcaatttcatgtctctaatctatgtatcatgtgtatgtgtgcgcatgctcacaaacaacacaacctcatcatg |
300 |
Q |
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| T |
40782928 |
tgaccaccttcttcactatattgcctttcaatttcatgtctctaatctatgtatca--tgtatgtgtgcgcatgctcacaaacaacacaacctcatcatg |
40783025 |
T |
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| Q |
301 |
tttcctcctttaattta-tgctcactcttggatcgaaaatatcttagttaaattaaattcgatcaaaaacaaggatttcacatctcatctcatatatt |
397 |
Q |
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| T |
40783026 |
tttcctcctttaatttattgctcactcttagatagaaaatatcttagttaaattaaattcgatcaaaaacaaggatttcacatctcatctcatatatt |
40783123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10787 - 10990
Alignment:
| Q |
1 |
ttctttaacctccttttaa--tttttcagcgccaaaggaagcaaatgggccaacacaaa-tcatgtgtcgtggaagtgtgttagggagcttcagggaccc |
97 |
Q |
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||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
10787 |
ttctttaacatcctttttaattttttcagcgccaaaggaagcaaatgggccaacacaaaatcatgtgtcgtggaagtgtgttagggagcttcagg-accc |
10885 |
T |
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| Q |
98 |
atttaaacactgtgcttttattgcaatttggggcttcttgtgagtatcactgtgctatggcctatatggtagataatggacgatggggtcgaccatcttc |
197 |
Q |
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| T |
10886 |
atttaaacactgtgcttttattgcaatttggggcttcttgtgagtatcactgtgctatggcctatatggtagataatggatgatggggtcgaccatcttc |
10985 |
T |
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| Q |
198 |
acgtg |
202 |
Q |
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||||| |
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| T |
10986 |
acgtg |
10990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 48661189 - 48661237
Alignment:
| Q |
335 |
aaaatatcttagttaaattaaattcgatcaaaaacaaggatttcacatct |
384 |
Q |
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| T |
48661189 |
aaaatatctaagttaaattaaattggatc-aaaacaaggatttcacatct |
48661237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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