View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_6 (Length: 349)
Name: NF20167_low_6
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 42656810 - 42657114
Alignment:
| Q |
29 |
actcttattttttggtatgaaaaaccagtgctactataattgagtggtataatatttaattgaaaatttgaaggaagatttgtgagaatattctccgtct |
128 |
Q |
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| T |
42656810 |
actcttattttttggtatgaaaaaccagtgctactataattgagtggtataatatataattgaaaatttgaaggaagatttgtgagaatattctccgtct |
42656909 |
T |
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| Q |
129 |
ctcacgctacatgttgagcgcacaatccaaaaagagctctatattatttccaatgaagtagtaatgtatattattgaatagataattagatatgcccttc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656910 |
ctcacgctacatgttgagcgcacaatccaaaaagagctctatattatttccaatgaagtagtaatgtatattattgaatagataattagatatgcccttc |
42657009 |
T |
|
| Q |
229 |
cttagttgtgttcctcactacaccaataataacaatctttctatattaattctgaaacttattttccacactaatatatctttgttaattatgaggacta |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42657010 |
cttagttgtgttcctcactacaccaataataacaatctttctatattaattctgaaacttattttccacactaatatatctttgttagttatgaggacta |
42657109 |
T |
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| Q |
329 |
atgag |
333 |
Q |
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||||| |
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| T |
42657110 |
atgag |
42657114 |
T |
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