View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_7 (Length: 317)
Name: NF20167_low_7
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_7 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 40782708 - 40782406
Alignment:
| Q |
1 |
aaaaatagatgccaagatgtgtttttccaaaagaatagatgatgaaaaataaaagggaaaagataaagggttctcatgtgctatacaatcaagggcttag |
100 |
Q |
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| T |
40782708 |
aaaaatagatgctaagatgtgtttttccaaaagaatagatgatgaaaaataaaagggaaaagataaagggttctcatgtgctatacaatcaagggcttag |
40782609 |
T |
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| Q |
101 |
atctctcacgtgatgaaagaaaccctacacctttgttcactttgatctttannnnnnnctttaattatttagcaagtaacaaaattgataaggatgaaaa |
200 |
Q |
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| T |
40782608 |
atctctcacgtgatgaaagaaaccctacacctttgttcactttgatctttatttttttctttaattatttagcaagtaacaaaattgataaggatgaaaa |
40782509 |
T |
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| Q |
201 |
ggttatgggtccggaattgagcagggtaattaagaactaaatctatgtattgagactatgataattagaatgagaaggaccacacgaattaatatgaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40782508 |
ggttatgggtccggaattgagcagggtaattaagaactaaatccatgtatagagactatgataattagaatgagaaggatcacacgaattaatatgaaca |
40782409 |
T |
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| Q |
301 |
tat |
303 |
Q |
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||| |
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| T |
40782408 |
tat |
40782406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 10756 - 10453
Alignment:
| Q |
7 |
agatgccaagatgtgtttttccaaaa-gaatagatgatgaaaaat--aaaagggaaaa-gataaa-gggttctcatgtgctatacaatcaagggcttaga |
101 |
Q |
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| T |
10756 |
agatgctaagatgtgtttttccaaaaagaatagatgatgaaaaaataaaaagggaaaaagataaaagggttctcatgtgctatacaatcaagggcttaga |
10657 |
T |
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| Q |
102 |
tctctcacgtgatgaaagaaaccctacacctttgttcactttgatctttannnnnnnctttaa--ttatttagcaagtaacaaaattgataaggatgaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
10656 |
tctctcacgtgatgaaagaaaccctacacctttgttcactttgatctttatttttttcttttaatttatttagcaagtaacaaaattgataaggatgaaa |
10557 |
T |
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| Q |
200 |
aggttatgggtccggaattgagcagggtaattaagaactaaatctatgtattgagactatgataattagaatgagaaggaccacacgaattaatatgaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10556 |
aggttatgggtccggaattgagcagggtaattaagaactaaatccatgtatagagactatgataattagaatgagaaggatcacacgaattaatatgaac |
10457 |
T |
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| Q |
300 |
atat |
303 |
Q |
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|||| |
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| T |
10456 |
atat |
10453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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