View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20167_low_8 (Length: 273)
Name: NF20167_low_8
Description: NF20167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20167_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 17187682 - 17187491
Alignment:
| Q |
86 |
gcaaaaagaaaagaaacatcatgcctggctacactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttt---- |
181 |
Q |
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| T |
17187682 |
gcaaaaagagaagaaacatcatgtctggctgcactttaagtgtactgagctttatatccatttactacccctagagtttgtgtatacactatcttttgta |
17187583 |
T |
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| Q |
182 |
----------tgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgttgatgttgt |
263 |
Q |
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| T |
17187582 |
aacaacttgttgtatctttggattgagaatagaaagtcctctaggttgaggcaaggaaatgtagggaaaggttgtcttagtgttgttgttgt |
17187491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 26656676 - 26656747
Alignment:
| Q |
181 |
ttgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagt |
252 |
Q |
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| T |
26656676 |
ttgtatctctggattgagaataggtagtcctctaggttgaggcaaggaaatatagggcaaggttgtcttagt |
26656747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17187767 - 17187729
Alignment:
| Q |
1 |
atactacatttaagcttacatataaagtctgacatgttc |
39 |
Q |
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| T |
17187767 |
atactacatttaagcttacatataaagtctgacatgttc |
17187729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 26656590 - 26656662
Alignment:
| Q |
113 |
gctacactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttttgta |
185 |
Q |
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| T |
26656590 |
gctacaatctaagtgtactgatcttcatatctatttactactcctagagtttgtgtaaagactatcttttgta |
26656662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 1696177 - 1696109
Alignment:
| Q |
117 |
cactttaagtatactgagctttatatccagttactacccctagagtttgtgtatacactatcttttgta |
185 |
Q |
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| T |
1696177 |
cactttaagtgtattgtgcttcatatctgtttactactcctagagtttatgtaaacactatcttttgta |
1696109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 12795641 - 12795573
Alignment:
| Q |
184 |
tatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagt |
252 |
Q |
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| T |
12795641 |
tatctttggatttagattaggaagtcctctaggttgaggcaaggaaatctagggcaaggttgtcttagt |
12795573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 11766957 - 11766883
Alignment:
| Q |
181 |
ttgtatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgtt |
255 |
Q |
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| T |
11766957 |
ttgtatctctggattgagaataggaagtcttttaggttgaggcaaggaaatctaggacgagattgtcttagtgtt |
11766883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 24727113 - 24727027
Alignment:
| Q |
184 |
tatctttggattgagaataggaagtcctctatgctggggcaaggaaatgtagggaaagattgtcttagtgttgatgttgttgatgat |
270 |
Q |
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| T |
24727113 |
tatctttggtttgatattaggaagtcctctaggttgaggcaaggaaatctaagacaagaatgtcttagtattgttgttgttcatgat |
24727027 |
T |
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