View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_high_1 (Length: 539)
Name: NF20168_high_1
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 8028787 - 8029300
Alignment:
| Q |
18 |
aaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatttgtcttacgacgaaaattttatatggtaca |
117 |
Q |
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| T |
8028787 |
aaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatttgttttacgacgaaaattttatatggtaca |
8028886 |
T |
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| Q |
118 |
gaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggt |
217 |
Q |
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| T |
8028887 |
gaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggt |
8028986 |
T |
|
| Q |
218 |
tgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaattagtaaagaaactttgccaagaacataatcacgagtctccagaataccaag |
317 |
Q |
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| T |
8028987 |
tgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgataaactttgccaagaacataatcacgagtctccagaataccaag |
8029086 |
T |
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| Q |
318 |
tcttcatgaatgatcttcaagggaatgatttcaacaatatttttaggttacttgataggttcacagagaaactaaatgatgaagtggaagatgggattgg |
417 |
Q |
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| T |
8029087 |
tcttcatgaatgatcttcaagggaatgatttcaacaacatttttaggttacttgataggttcacagagaaactaaatgatgaagtggaagatgggattgg |
8029186 |
T |
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| Q |
418 |
tggtccaatctttttctatggggctcctggttctttttatggcagaatttttccaacaaaaacaatgcatttcattcattcctcttacagccttcaatgg |
517 |
Q |
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| T |
8029187 |
tggtccaatctttttctatggggctcctggttctttttatggcaggatttttccaacaaaaacaatgcatttcattcattcctcttacagccttcaatgg |
8029286 |
T |
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| Q |
518 |
ctctcacaggttct |
531 |
Q |
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| T |
8029287 |
ctctcacaggttct |
8029300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 7298245 - 7298122
Alignment:
| Q |
129 |
tttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgg |
228 |
Q |
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||||||||||||| ||| |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||||||| |||||||||||||| |
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| T |
7298245 |
tttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctgg |
7298146 |
T |
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| Q |
229 |
gccaaacactttgtttgtgatatc |
252 |
Q |
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| T |
7298145 |
accaaacactttgtttgtggtatc |
7298122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
203 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
264 |
Q |
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| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
203 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
243 |
Q |
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| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
203 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
265 |
Q |
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| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 27736751 - 27736710
Alignment:
| Q |
431 |
ttctatggggctcctggttctttttatggcagaatttttcca |
472 |
Q |
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| T |
27736751 |
ttctatggagttcctggttcattttatggcagaatttttcca |
27736710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
203 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
264 |
Q |
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| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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