View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_high_5 (Length: 382)
Name: NF20168_high_5
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 8262616 - 8262968
Alignment:
| Q |
15 |
cagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatatttatgagttcacaggataagtggttttgtttgttaccaaccacat |
114 |
Q |
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| T |
8262616 |
cagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatatttatgagttcacaggataagtggttttgtttgttaccaaccacat |
8262715 |
T |
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| Q |
115 |
ttgaaattcaaaatagtatagcttttggaaagttaagtttgtggttggtgtgatgtgaatatagtgctttcattgattgaatcagtttatatttggaagg |
214 |
Q |
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| T |
8262716 |
ttgaaattcaaaatagtatagcttttggaaagttaagtttgtggttggtgtgatgtgaatatagtgctttcattgattgaatcagtttatatttggaagg |
8262815 |
T |
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| Q |
215 |
agttttgatttttcatgccttttttgtgcaaaaactggggttcatgaatatgatcataggttataccactttcttccacattcaaaggcaatgataccta |
314 |
Q |
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| T |
8262816 |
agttttgatttttcatgccttttatgtgcaaaaactggggttcatgaatatgatcataggttataccactttcttccacattcaaaggcaatgataccta |
8262915 |
T |
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| Q |
315 |
taagtggagttagttcaaaaaagaaaacagtgtttggttttaatccataaaag |
367 |
Q |
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| T |
8262916 |
taagtggagttagttcaaaaaagaaaacagtgtttggttttaatctataaaag |
8262968 |
T |
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