View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_high_8 (Length: 255)
Name: NF20168_high_8
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 40225159 - 40224947
Alignment:
| Q |
24 |
atgctcgtctctgactcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatc |
123 |
Q |
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| T |
40225159 |
atgctcgtctctgactcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatc |
40225060 |
T |
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| Q |
124 |
tatctcacctctcctccgccgctgattacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatca |
223 |
Q |
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| T |
40225059 |
tctctcacctctcctccgccgctgattacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatca |
40224960 |
T |
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| Q |
224 |
ctccattgctgat |
236 |
Q |
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||||||||||||| |
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| T |
40224959 |
ctccattgctgat |
40224947 |
T |
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Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 51588077 - 51588255
Alignment:
| Q |
50 |
agacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatctatctcacctctcctccgccgctgat |
149 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||| |||| |
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| T |
51588077 |
agacgcaatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcgtcgacgctct--------atctctctcacctatcctccgccgttgat |
51588168 |
T |
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| Q |
150 |
tacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcagaagtatcactccattgctgat |
236 |
Q |
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| T |
51588169 |
tacatcaatgttttcgcccctatccatcgtcgtagactccattggatccaaatctttcagatgcagaagtatcattccatagctgat |
51588255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 37511810 - 37511733
Alignment:
| Q |
39 |
tcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgt |
116 |
Q |
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|||||||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
37511810 |
tcctacgccaaagatgcaatgcttgcttggtttcacggcgagttcgccgccgccaacgcgatcattgatgctctctgt |
37511733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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