View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_low_10 (Length: 233)
Name: NF20168_low_10
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 11826417 - 11826619
Alignment:
| Q |
14 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactgacattttttatg |
113 |
Q |
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| T |
11826417 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactaacattttttatg |
11826516 |
T |
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| Q |
114 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgta |
213 |
Q |
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| T |
11826517 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacacata |
11826616 |
T |
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| Q |
214 |
tat |
216 |
Q |
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||| |
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| T |
11826617 |
tat |
11826619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 11840334 - 11840389
Alignment:
| Q |
146 |
gaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaac |
205 |
Q |
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| T |
11840334 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaac |
11840389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 35040395 - 35040359
Alignment:
| Q |
58 |
gtttgatccccaccctcaatataaaaactaacaatac |
94 |
Q |
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| T |
35040395 |
gtttgatccccaccctcagcataaaaactaacaatac |
35040359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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