View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20168_low_4 (Length: 436)
Name: NF20168_low_4
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 36458485 - 36458103
Alignment:
| Q |
18 |
atgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458485 |
atgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccg |
36458386 |
T |
|
| Q |
118 |
cgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36458385 |
cgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgcacgcaggggtgttatttgggtt |
36458286 |
T |
|
| Q |
218 |
agaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458285 |
agaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattactttaatgtctatattactact |
36458186 |
T |
|
| Q |
318 |
ttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatccaaccaatggcatactcctcctag |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36458185 |
ttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattatccaaccaatggcatgctcctcctag |
36458103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
99 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
173 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||| ||||| || |||||||| |||| ||| | ||||||| |
|
|
| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
99 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
159 |
Q |
| |
|
||||| || |||||||| | ||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University