View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_low_5 (Length: 423)
Name: NF20168_low_5
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 194 - 390
Target Start/End: Complemental strand, 2260107 - 2259911
Alignment:
| Q |
194 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
293 |
Q |
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| T |
2260107 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
2260008 |
T |
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| Q |
294 |
cagagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataagaaaaactatacatgaatata |
390 |
Q |
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| T |
2260007 |
catagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataagaaaaactatacatgaatata |
2259911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 2260287 - 2260169
Alignment:
| Q |
14 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
113 |
Q |
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| T |
2260287 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
2260188 |
T |
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| Q |
114 |
catcctgaataaattcacg |
132 |
Q |
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| T |
2260187 |
catcctgaataaattcacg |
2260169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 357
Target Start/End: Original strand, 44734008 - 44734137
Alignment:
| Q |
228 |
attacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacctcagagacaaagtttggtgaggtttcatcttgtag |
327 |
Q |
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| T |
44734008 |
attacagcaatgatctgagattggtgagtagtttttcagactcatgaaaataaatgttgacaacttcggatacgaagttaggggaggtgtgatcttgaag |
44734107 |
T |
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| Q |
328 |
ctgctggagctgcaagaattgctcatccaa |
357 |
Q |
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||| || |||||||| |||||||||||||| |
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| T |
44734108 |
ctgttgaagctgcaaaaattgctcatccaa |
44734137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 44733780 - 44733831
Alignment:
| Q |
25 |
gtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaat |
76 |
Q |
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| T |
44733780 |
gtcactcttttagcaccaatgcttgagctgctaccaatgaattgattcaaat |
44733831 |
T |
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