View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20168_low_7 (Length: 287)
Name: NF20168_low_7
Description: NF20168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20168_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 46549276 - 46549533
Alignment:
| Q |
14 |
ttctatgctgttctttgataaatgcttcattggatgatatgaatctaccctatataggatttttatattatatacattgttactgttagaatatacatag |
113 |
Q |
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| T |
46549276 |
ttctatgctgttctttgataaatgcttcattggatgatatgaatctaccctatataggatttttatattatatacattgttactgttagaatatacatag |
46549375 |
T |
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| Q |
114 |
tttgattactctttattgaattgtatgtagtttagagactatagtgttagtagagactctagtgatagcttgctgtgcaagctttaatactttcttcttc |
213 |
Q |
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| T |
46549376 |
tttgattactctttattgaattgtatgtagtttagagactatagtgttagtagagactctagtgatagcttgccgtgcaagctttaatactttcttcttc |
46549475 |
T |
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| Q |
214 |
tttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgt |
271 |
Q |
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| T |
46549476 |
tttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgt |
46549533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 1025834 - 1026089
Alignment:
| Q |
14 |
ttctatgctgttctttgataaatgcttcattggatgatatgaatctaccctatataggatttttatattatatacattgttactgttagaatatacatag |
113 |
Q |
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| T |
1025834 |
ttctatgtcgttctttgataaatgcttccttggatgatatgaatataccctatataggatttttatattatatacattgttactgtttgaatatacatag |
1025933 |
T |
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| Q |
114 |
tttgattactctttattgaattgtatgtagtttagagactatagtgttagtagagactctagtgatagcttgctgtgcaagctttaatactttcttcttc |
213 |
Q |
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| T |
1025934 |
tttgattactctgtattgaattatatgtagtttagagac--tagtgttagtagagactctagtgatagcttgctgtgcaagctttaataatttcttcttc |
1026031 |
T |
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| Q |
214 |
tttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgt |
271 |
Q |
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| T |
1026032 |
tttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttgt |
1026089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 40827760 - 40827825
Alignment:
| Q |
205 |
ttcttcttctttaatattgaaatgtagatattttatttaagtgactaatgatggtataattatttg |
270 |
Q |
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| T |
40827760 |
ttcttcttctttgatattggattatagagattttatttaagggactaaagatggtataactatttg |
40827825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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