View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20169_high_13 (Length: 331)

Name: NF20169_high_13
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20169_high_13
NF20169_high_13
[»] chr7 (12 HSPs)
chr7 (3-323)||(36221014-36221334)
chr7 (57-323)||(36217021-36217295)
chr7 (49-210)||(35982400-35982561)
chr7 (49-210)||(36003812-36003973)
chr7 (63-216)||(36226293-36226446)
chr7 (87-298)||(35958415-35958634)
chr7 (84-298)||(35977867-35978089)
chr7 (84-298)||(35999279-35999501)
chr7 (84-216)||(35947207-35947339)
chr7 (241-299)||(35973898-35973956)
chr7 (241-299)||(35995310-35995368)
chr7 (248-298)||(35926323-35926373)
[»] chr1 (2 HSPs)
chr1 (248-294)||(18126298-18126344)
chr1 (63-192)||(18126105-18126234)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 36221334 - 36221014
Alignment:
Q  3 acgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36221334 acgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgtcagctgccaccttattca 36221235  T
Q  103 atctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgcc 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221234 atctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgcc 36221135  T
Q  203 agaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagc 302  Q
    |||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221134 agaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagc 36221035  T
Q  303 atgttgttggttcttcatctc 323  Q
    |||||||||||||||| ||||    
T  36221034 atgttgttggttcttcttctc 36221014  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 57 - 323
Target Start/End: Complemental strand, 36217295 - 36217021
Alignment:
Q  57 attctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtg 156  Q
    |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | |    
T  36217295 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcg 36217196  T
Q  157 gatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc--------- 247  Q
    |||| ||||||||||| ||||||||||||||||  || ||||| ||||||||||  ||||||||       | ||||||||||||||||||             
T  36217195 gattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcc-tgtcttgcaactcaaatccatccaata 36217097  T
Q  248 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcatctc 323  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  |||||||| ||||    
T  36217096 catcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggttcttcttctc 36217021  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 35982400 - 35982561
Alignment:
Q  49 caacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaa 148  Q
    ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| ||    
T  35982400 caacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaa 35982499  T
Q  149 agctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 210  Q
    |||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  35982500 agcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 35982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 36003812 - 36003973
Alignment:
Q  49 caacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaa 148  Q
    ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| ||    
T  36003812 caacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaa 36003911  T
Q  149 agctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 210  Q
    |||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  36003912 agcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 36003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 36226293 - 36226446
Alignment:
Q  63 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 162  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||  |  || |||| |||||||||||||  ||||| | |    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactag 36226392  T
Q  163 aggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa 216  Q
    |||||||||| || |||| ||||||||| | ||||||||  ||||||| |||||    
T  36226393 aggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa 36226446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 298
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
Q  87 gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct 186  Q
    ||||||||||||| ||||||||  ||||||||||||||||  || | |||  |||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  35958415 gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct 35958514  T
Q  187 tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta 277  Q
    |||  || ||||| |||||||||| ||||| |||       |||||||||||| |||||||         ||||||||||||||||||| || ||||| |    
T  35958515 tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa 35958613  T
Q  278 cctgcctcaaccattcacgca 298  Q
     |||||||| |||||||||||    
T  35958614 tctgcctcagccattcacgca 35958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 298
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
Q  84 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 183  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35977867 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35977966  T
Q  184 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 274  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35977967 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35978065  T
Q  275 gtacctgcctcaaccattcacgca 298  Q
    | | |||||||| |||||||||||    
T  35978066 gaatctgcctcagccattcacgca 35978089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 298
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
Q  84 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 183  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35999279 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35999378  T
Q  184 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 274  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35999379 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35999477  T
Q  275 gtacctgcctcaaccattcacgca 298  Q
    | | |||||||| |||||||||||    
T  35999478 gaatctgcctcagccattcacgca 35999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
Q  84 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 183  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||| ||| |  ||||||| ||||||||||| ||||||  ||    
T  35947207 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta 35947306  T
Q  184 ccttcattcgagtgctgccagaagctttcacaa 216  Q
     |||||  || ||||| | ||||||||||||||    
T  35947307 acttcacccgtgtgcttcgagaagctttcacaa 35947339  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 35973898 - 35973956
Alignment:
Q  241 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 299  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35973898 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35973956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 35995310 - 35995368
Alignment:
Q  241 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 299  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35995310 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35995368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
Q  248 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca 298  Q
    ||||||||||||||||||| || ||||| | |||||||| |||||||||||    
T  35926323 catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca 35926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
Q  248 catcttcagcatcatagcagatgttttgtacctgcctcaaccattca 294  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  18126298 catcttcagcatcatagcagatattttgtatctgcctccgccattca 18126344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
Q  63 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 162  Q
    |||||||||||| | ||||| || | ||| ||||||| ||||||||  ||||| ||||| ||||  | || |||||||| ||| |||||  ||| ||| |    
T  18126105 gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg 18126204  T
Q  163 aggaagaaaacaagtggcataccttcattc 192  Q
    ||||| | || ||||||| |||||||||||    
T  18126205 aggaacagaagaagtggcgtaccttcattc 18126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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