View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20169_high_16 (Length: 316)
Name: NF20169_high_16
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 4651851 - 4652154
Alignment:
| Q |
1 |
atgaaggccttacttactagaaaattcaagacatgatcaaacaacatctttttgctaagtgctaaaattatttagttttgatattacatgtttacgctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4651851 |
atgaaggccttacttactagaaaattcaagacatgatcaaacaacatctttttgctaagtgctaaaattatttagttttgatattacatgtttacgctat |
4651950 |
T |
|
| Q |
101 |
acatatataaagtgttgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4651951 |
acatatataaagtgttgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaa |
4652050 |
T |
|
| Q |
201 |
atgttcttgagtacttgcccttgctgaggctgtgttctccttgtaggtgtgggatctttcgaaatgttggtcacactcttgatcactcataaactgcgag |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652051 |
atgttcttgagtacttgccctcgctgaggctgtgctctccttgtaggtgtgggatctttcgaaatgttggtcacactcttgatcactcataaactgcgag |
4652150 |
T |
|
| Q |
301 |
aatt |
304 |
Q |
| |
|
|||| |
|
|
| T |
4652151 |
aatt |
4652154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 4670944 - 4671203
Alignment:
| Q |
4 |
aaggccttacttactagaaaattcaagacatgatcaaacaacatctttttgctaagtgctaaaattatttagttttgatattacatgtttacgctataca |
103 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4670944 |
aaggcctaacttactagaaaattcaagatatgatcaaacaacatcttttcgccaagtgctaaaattatttagttttgatattacat---tacgctataca |
4671040 |
T |
|
| Q |
104 |
tatataaagtgttgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaaatg |
203 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||| |||||||| |||||||||||||| ||||||| |||| ||||| |||| | || ||| |||| |
|
|
| T |
4671041 |
tatataaagtggtgttcgatattaatcgctaaatgttaactttgaaattttgacatgaatacgatcgtgttctttgattcccaatctcagaaaaagaatg |
4671140 |
T |
|
| Q |
204 |
ttcttgagtacttgcccttgctgaggctgtgttctccttgtaggtgtgggatctttcgaaatg |
266 |
Q |
| |
|
|||||||||||||| ||| |||||| |||| ||||||| |||||| |||||||| ||||||| |
|
|
| T |
4671141 |
ttcttgagtacttggcctcgctgagattgtgctctccttataggtgcgggatcttgcgaaatg |
4671203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 4641996 - 4642258
Alignment:
| Q |
1 |
atgaaggccttacttactagaaaattcaagacatgatcaaacaacatctttttgctaagtgctaaaattatttagttttgatattacatgtttacgctat |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4641996 |
atgaatgcctaacttactagaaaattcaagatatgatcaaacaacatcttttcgctaagtactgaaattatttagttttgatattaca---ttacgctat |
4642092 |
T |
|
| Q |
101 |
acatatataaagtgttgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaa |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| | || ||||| ||| | ||||||| |
|
|
| T |
4642093 |
acatatataaggtggtgttccatattaactgctaaatataaactttgaagttttgacatgaatacgatcgtcttttttgattcctaatctcagagaaaag |
4642192 |
T |
|
| Q |
201 |
atgttcttgagtacttgcccttgctgaggctgtgttctccttgtaggtgtgggatctttcgaaatg |
266 |
Q |
| |
|
|||||||| ||| ||| ||| |||||| |||| ||||||| | || ||||||||| ||||||| |
|
|
| T |
4642193 |
atgttcttttgtaattgacctcgctgagattgtgctctccttaaaagtctgggatcttgcgaaatg |
4642258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 4635192 - 4635317
Alignment:
| Q |
43 |
aacatctttttgctaagtgctaaaattatttagttttgatattacatgtttacgctatacatatataaagtgttgttccatattaattgctaaatgtaaa |
142 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || |||| ||||||| |||| |
|
|
| T |
4635192 |
aacatcttttcaccaagtgctaaaattatttagttttgatattaca---ttacgctatacatatat-aagtggtgttctatgttaaccgctaaatataaa |
4635287 |
T |
|
| Q |
143 |
ctttgaggttttgacatgaatatgatcgtg |
172 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
4635288 |
ctttgaagttttgacatgaatacgatcgtg |
4635317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 4676433 - 4676583
Alignment:
| Q |
116 |
tgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaaatgttcttgagtact |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| ||| || | | |||||| |||| |||| ||| |
|
|
| T |
4676433 |
tgttccatattaattgctaaatataaactttgaggttttgatatgaacatgattgcggtctttgataaccattctcagagaaagggagttcatgaggact |
4676532 |
T |
|
| Q |
216 |
tgcccttgctgaggctgtgttctccttgtaggtgtgggatctttcgaaatg |
266 |
Q |
| |
|
|||||||| ||| ||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
4676533 |
tgcccttgtagagactgtgctctccttataggtgtgggatcttgcgaaatg |
4676583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 4665272 - 4665507
Alignment:
| Q |
25 |
ttcaagacatgatcaaacaacatctttt-tgctaagtgctaaaattatttagttttgatat-tacatgtttacgcta----tacatatataaagtgttgt |
118 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |||| |||||||||||||||| | || |||||||| ||| ||||| |||||| | ||| |
|
|
| T |
4665272 |
ttcaagatatgatcaaacaacatcttttatgct--gtgcaaaaattatttagttttacactatatatgtttacactacacttacatgtataaaagggtgt |
4665369 |
T |
|
| Q |
119 |
tccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaaatgttcttgagtacttgc |
218 |
Q |
| |
|
||||| | || |||||||| |||| ||||| |||||| |||||||| || |||| |||| ||||| |||| |||||| |||||| |||||| | |
|
|
| T |
4665370 |
tccatgt-aactgctaaatataaattttgaagttttggcatgaatacgaccgtgttctttgattcccaatcccagagaaaggctgttctcgagtacctag |
4665468 |
T |
|
| Q |
219 |
ccttgctgaggctgtgttctccttgtaggtgtgggatct |
257 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
4665469 |
cctcgctgagactgtgctctccttgtaggtgtgcgatct |
4665507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 4660318 - 4660373
Alignment:
| Q |
202 |
tgttcttgagtacttgcccttgctgaggctgtgttctccttgtaggtgtgggatct |
257 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
4660318 |
tgttcttgagtacttggcctcgctgagattgtactctccttgtaggtgtgggatct |
4660373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 4629355 - 4629481
Alignment:
| Q |
131 |
gctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaaatgttcttgagtacttgcccttgctgaggc |
230 |
Q |
| |
|
||||||| |||| ||||| |||||| |||||||| || |||| |||| ||||| |||| |||||| |||||| |||||| | ||| |||||| | |
|
|
| T |
4629355 |
gctaaatataaattttgaagttttggcatgaatacgaccgtgttctttgattcccaatcccagagaaaggctgttctcgagtacctagcctcgctgagac |
4629454 |
T |
|
| Q |
231 |
tgtgttctccttgtaggtgtgggatct |
257 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
4629455 |
tgtgctctccttgtaggtgtgcgatct |
4629481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 18927457 - 18927265
Alignment:
| Q |
110 |
aagtgttgttccatattaattgctaaatgtaaactttgaggttttgacatgaatatgatcgtggtcttggattcacaatattcgagaaaaaatgttcttg |
209 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||| |||| |||| | |||||| ||||| || |
|
|
| T |
18927457 |
aagtggtgttccatattaattgctaaatataaactctaaggttttgacatgaatacgatcgtggtctttgattaccaatttcagagaaagggtgttcatg |
18927358 |
T |
|
| Q |
210 |
agtacttgcccttgctgaggctgtgttctccttgtaggtgtgggatctttcgaaatgttggtcacactcttgatcactcataaactgcgagaa |
302 |
Q |
| |
|
|||||||||||| || ||| | || ||||||| ||||||||||||| | ||||| | |||| | ||| |||||||||||| | |||||| |
|
|
| T |
18927357 |
agtacttgccctcgccgagacattgctctccttcaaggtgtgggatctcgcaaaatgcagttcactccctttatcactcataaatttcgagaa |
18927265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University