View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20169_high_17 (Length: 309)
Name: NF20169_high_17
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_high_17 |
 | |
|
| [»] scaffold0037 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0037 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 102975 - 103203
Alignment:
| Q |
3 |
ctactgagctcgacctctatttacctgttgggtaannnnnnnn---agttttctgttacacagggagaatggaatgtaagcattacttgaatgtcgacaa |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
102975 |
ctactgagctcggcctctatttacctgttgggtaatttttttttttagttttctgttacacagggagaatggaaagtaagcattacttgaatgtcgacaa |
103074 |
T |
|
| Q |
100 |
ttctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtc |
199 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
103075 |
tcctttcagcaagtgtgcgtgtaagggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtc |
103174 |
T |
|
| Q |
200 |
gaagagtgtaaagtggagcatattccaca |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
103175 |
gaagagtgtaaagtggagcatattccaca |
103203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 32572 - 32361
Alignment:
| Q |
3 |
ctactgagctcgacctctatttacctgttgggtaannnnnnnn-agttttctgttacacagggagaatggaatgtaagcattacttgaatgtcgacaatt |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
32572 |
ctactgagctcggcctctatttacctgttgggtaatttttttttagttttctgttacacagggagaatggaaagtaagcattacttgtatgtcgacaatc |
32473 |
T |
|
| Q |
102 |
ctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtcga |
201 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32472 |
ctttcaa---------------gggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtcga |
32388 |
T |
|
| Q |
202 |
agagtgtaaagtggagcatattccaca |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32387 |
agagtgtaaagtggagcatattccaca |
32361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 10427125 - 10426956
Alignment:
| Q |
55 |
ttacacagggagaatggaatgtaagcattacttgaatgtcgacaattctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaa |
154 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10427125 |
ttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcagcaagtatgtgtgtaagggaaatcatcttagaaagattgaagttgaa |
10427026 |
T |
|
| Q |
155 |
caagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10427025 |
caagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaagagtgtaaagtggagcatattc |
10426956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University