View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20169_high_6 (Length: 365)
Name: NF20169_high_6
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 87 - 363
Target Start/End: Original strand, 39446083 - 39446351
Alignment:
| Q |
87 |
atttttctatatactggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggagagattttttattattann |
186 |
Q |
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| T |
39446083 |
atttttctatatattggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgttaaggagagattttttttttct--- |
39446179 |
T |
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| Q |
187 |
nnnnnnnnngtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcactt |
286 |
Q |
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| T |
39446180 |
-----ttttgtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcactt |
39446274 |
T |
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| Q |
287 |
aagaattgaacccaagttctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggtta |
363 |
Q |
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| T |
39446275 |
tagaatcgaatccaaattctcctaaaaaatttgttatcggtggagttcatcaacaattgaggtcaaatgtttggtta |
39446351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 39445216 - 39445292
Alignment:
| Q |
16 |
tgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacattttt |
92 |
Q |
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| T |
39445216 |
tgttgccgcaaagagtgatgaaaccaaatacagcacctaaagaaaaatttcaagaaaattatattatcaacattttt |
39445292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 39467630 - 39467688
Alignment:
| Q |
305 |
ctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggtta |
363 |
Q |
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| T |
39467630 |
ctcctaaaaaaatcgtccttggtggagttcatcaacaattaatctcaaatgtttggtta |
39467688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 35314778 - 35314931
Alignment:
| Q |
16 |
tgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggattga-att |
114 |
Q |
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| T |
35314778 |
tgttgccacatagagtgatgaaactaaatacagctgctaaagaaaaattcaaagaaaattatattatcaacattttt-taaatattagagaattgatatt |
35314876 |
T |
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| Q |
115 |
aaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggaga |
169 |
Q |
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| T |
35314877 |
aaattaaatagaattttacattggcgataaatctaacaaacatttattaaggaga |
35314931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 35315764 - 35315858
Alignment:
| Q |
67 |
aagaaaattatatcatcaacatttttctatatactggaggattga-attaaattaaatagaacttgacattggaaataaatctaacaaacatttg |
160 |
Q |
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||||||| ||||| |||||||||||| || ||| ||||||||||| |||||||||||||||| |||||| | ||||| ||| ||||||||||| |
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| T |
35315764 |
aagaaaaatatattatcaacatttttttaaatattggaggattgatattaaattaaatagaatttgacactaacaataactcttacaaacatttg |
35315858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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