View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20169_high_9 (Length: 345)
Name: NF20169_high_9
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 36833930 - 36833596
Alignment:
| Q |
11 |
caaagggggactaattagcctataatattttgaaaatgttatggataaacttgtttctacacacatgtatatatagtccactacattcgaaccacacgac |
110 |
Q |
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| T |
36833930 |
caaagggggactaattagcctataatattttgaaaatgttatggataaattagtttctacacacatgtatatatagtccactacattcgaaccacacgac |
36833831 |
T |
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| Q |
111 |
acgtcaacacctctttgccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatatgttc |
210 |
Q |
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| T |
36833830 |
acgtcaacacctctttgccaatgtctaacacgtggcatattcatatccttataagaacttctttgataattaagtgccatgctacacgtgcaatatgttc |
36833731 |
T |
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| Q |
211 |
aagtgtctcactacgcactatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtgtaatttcccttccaaaaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36833730 |
aagtgtctcactacgcactatacgtttaaccgcacactttgttcatcatcaagatcactaataaccatatccactttgtgtaattttccttccaaaaaca |
36833631 |
T |
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| Q |
311 |
agactcaatttcttccaattattccatcaactcag |
345 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36833630 |
agactcaatttcttccaattattccatcaactcag |
36833596 |
T |
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