View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20169_low_2 (Length: 430)
Name: NF20169_low_2
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 2468063 - 2467660
Alignment:
| Q |
13 |
gagaacagcataaacttcaaaactgtcatggatgcatcatcattatcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcgg |
112 |
Q |
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| T |
2468063 |
gagaacagcataaacttcaaaactgtcatggatgcatcatca---------gaagacacattctgtgttgccaattggcattgagaatcggaattttcgg |
2467973 |
T |
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| Q |
113 |
caacagagtcatcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467972 |
caacagagtcatcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcag |
2467873 |
T |
|
| Q |
213 |
gaaattaccgttgtagcccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggaggggggaaaatggaagaggata |
312 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2467872 |
gaaattaccgttgtagaccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggagggggaaaaatggaagaggata |
2467773 |
T |
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| Q |
313 |
taagtgaggtggtgaaagatgaaaagtgctggctcttaaatggttttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattcctt |
412 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467772 |
taagtgaggtggtgaaagataaaaagtgctggctcttaaatggttttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattcctt |
2467673 |
T |
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| Q |
413 |
cttctgcgctgct |
425 |
Q |
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|||||||| |||| |
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| T |
2467672 |
cttctgcgttgct |
2467660 |
T |
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