View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20169_low_3 (Length: 423)
Name: NF20169_low_3
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 55 - 414
Target Start/End: Complemental strand, 18189330 - 18188972
Alignment:
| Q |
55 |
tattactactcccaactgaaataaatgtcataatcttttggaaccaacaatattactactactgcagagtagttaagaactgaagaagcaatagcaatgg |
154 |
Q |
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| T |
18189330 |
tattactactcccaactgaaataaatgtcataatcttttggaaccaacaatattactactactgcagagtagttaagaactgaagaagcaatagcaatga |
18189231 |
T |
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| Q |
155 |
cactatcctgatatttattctnnnnnnnnnccattggatttcagtccaaaaatctcctttcctttgtctattcatcttgttatttatcctgtctcattta |
254 |
Q |
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| T |
18189230 |
cactatcctgatatttattctaaaaaaaaac-attggatttcagtccaaaaatctcctttcctttgtctattcatcttgttatttatcctgtctcattta |
18189132 |
T |
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| Q |
255 |
cataatatgtacaacaaagatatttactcaacaaagtcatctgattcagaataaagaagaaaagaaaagaatcttagttagcagaaagcaactatactag |
354 |
Q |
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| T |
18189131 |
cataatatgtacaacaaagatatttactcaacaaagtcatctgattcagaataaagaagaaaagaaaagaatcttagttagcagaaagcaactatactag |
18189032 |
T |
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| Q |
355 |
cgtatgatctatttcagaaacattttgaaatctgaccagtctatctcagtataatctacc |
414 |
Q |
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| T |
18189031 |
cgtatgatctatttcagaaacattttgaaatctgaccagtctatctcactataatttacc |
18188972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 66 - 414
Target Start/End: Complemental strand, 18194542 - 18194213
Alignment:
| Q |
66 |
ccaactgaaataaatgtcataatcttttggaaccaacaatattactactactgcagagtagtta-agaactgaagaagcaatagcaatggcactatcctg |
164 |
Q |
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| T |
18194542 |
ccaactgaaataaatgtcataagcttttggaaactacaatattactacta---cagagtagatatagaactgatgaagcaatagcaatagcattctcctg |
18194446 |
T |
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| Q |
165 |
atatttattctnnnnnnnnnccattggatttcagtccaaaaatctcctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgt |
264 |
Q |
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| T |
18194445 |
atatttattctaaaacaaat-cattggatttcagtcaaaaaatctcctttcctttgt-tatttatcgtgtgat---tcgtgtctcatttacagaatatgt |
18194351 |
T |
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| Q |
265 |
acaacaaagatatttactcaacaaagtcatctgattcagaataaagaagaaaagaaaagaatcttagttagcagaaagcaactatactagcgtatgatct |
364 |
Q |
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| T |
18194350 |
acaacaaagatatttactaaacaaagtcatctggttc----taga-aagagaagaaaag-------cttagcagaaatcaactatattagcctatgatct |
18194263 |
T |
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| Q |
365 |
atttcagaaacattttgaaatctgaccagtctatctcagtataatctacc |
414 |
Q |
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| T |
18194262 |
atttcagaaacactttgaaatctgatcagtctttctcactataatttacc |
18194213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 18199007 - 18198920
Alignment:
| Q |
212 |
tttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatatttactcaacaaagtcatctgattc |
301 |
Q |
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| T |
18199007 |
tttcctttgtcttttc--cttgttatttatcctgtctcatttacataatatgtgcatcaaagatatttactcaacaaagttatctaattc |
18198920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 18231811 - 18231703
Alignment:
| Q |
185 |
ccattggatttcagtccaaaaatctcctttcctttgtct---attcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatatttac |
281 |
Q |
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| T |
18231811 |
ccattggatattagttcaaaaatctcatttccttggtcttcaattcaccttgttatttatcctatctcatataaaaaatatgcacatcaaagatatttac |
18231712 |
T |
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| Q |
282 |
tcaacaaag |
290 |
Q |
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| T |
18231711 |
tcaacaaag |
18231703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 18231910 - 18231878
Alignment:
| Q |
71 |
tgaaataaatgtcataatcttttggaaccaaca |
103 |
Q |
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| T |
18231910 |
tgaaataaatgtcataattttttggaaccaaca |
18231878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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