View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20169_low_4 (Length: 317)
Name: NF20169_low_4
Description: NF20169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20169_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 25602458 - 25602171
Alignment:
| Q |
11 |
acatcatcacgtaccttaagagtggatatagtaatagaagaccgacttttctcacatattttctgagaaggactaccattataagtaaaggtacaaagac |
110 |
Q |
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| T |
25602458 |
acatcataacgtaccttaagagtggatatagtaatagaagaccgacctttctcacatattttctgagaaggactaccattataagtaaaggtacgaagac |
25602359 |
T |
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| Q |
111 |
ttggagtagatagttcaattgtgtcagttatggtaaattcgagtgaacgattgtagatagataaattgactagggtttcacttgatatgacaaagacacg |
210 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25602358 |
ttggagtagatagttcaattttgtcagttatggtaaatttgagtgaacggttatagatagataaattgactagggtttcacttgatatgacaaagacacg |
25602259 |
T |
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| Q |
211 |
tgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccg |
298 |
Q |
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| T |
25602258 |
tgcgttccttacctcacaattctgaatgaccaaactattcaacattttaaaggccaaaaagggttcaacacaactgctttcatcaccg |
25602171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 25597635 - 25597375
Alignment:
| Q |
38 |
atagtaatagaagaccgacttttctcacatattttctgagaaggactaccattataagtaaaggtacaaagacttggagtagatagttcaattgtgtcag |
137 |
Q |
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| T |
25597635 |
atagaaatagaagaatgacctttgtcacatattttctgagcatggttgcctctataagaaaagttacgtagacttggagtagataactcaattttgtcgg |
25597536 |
T |
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| Q |
138 |
ttatggtaaattcgagtgaacgattgtagatagataaattgactagggtttcacttgatatgacaaagacacgtgcattccttacctcacaattctgaat |
237 |
Q |
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| T |
25597535 |
ttatggtatcttcgtgcgggctattgttgatagataaattgactagggtttcacttgatatgaccaagacacgggcatcccttacctcacatttctgaat |
25597436 |
T |
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| Q |
238 |
gaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccg |
298 |
Q |
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| T |
25597435 |
gaccaaactattcaacattttaaaggcgaaaaagggctcaacacaactgctttcatcaccg |
25597375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 20994324 - 20994381
Alignment:
| Q |
72 |
tctgagaaggactaccattataagtaaaggtacaaagacttggagtagatagttcaat |
129 |
Q |
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| T |
20994324 |
tctgataaggaataccattaaaagtaaacgtacaaagacttggagtacatagctcaat |
20994381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 286
Target Start/End: Original strand, 55116748 - 55116949
Alignment:
| Q |
90 |
tataagtaaaggtacaaagacttggagtagatagttcaattgtgtcagttatggtaaattcgagtgaacgattgtagatagataaattgactaggg---- |
185 |
Q |
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| T |
55116748 |
tataagtaaaagtacaaagacttggagcagatagcttaattttggcagttttggcaaattctgatgatttattacaaatagataaattaacaagggcttc |
55116847 |
T |
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| Q |
186 |
-tttcacttgatatgacaaagacacgtgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaac |
284 |
Q |
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| T |
55116848 |
acttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaacaaactattcgaccttttaaaggataaaaagggctcatcacaac |
55116947 |
T |
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| Q |
285 |
tg |
286 |
Q |
| |
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|| |
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| T |
55116948 |
tg |
55116949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 36636336 - 36636389
Alignment:
| Q |
63 |
cacatattttctgagaaggactaccattataagtaaaggtacaaagacttggag |
116 |
Q |
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|||||||||||||| |||| ||||| || |||||||||||||||||||||||| |
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| T |
36636336 |
cacatattttctgaacaggagtaccagtaaaagtaaaggtacaaagacttggag |
36636389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 38862689 - 38862740
Alignment:
| Q |
79 |
aggactaccattataagtaaaggtacaaagacttggagtagatagttcaatt |
130 |
Q |
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| T |
38862689 |
aggactaccgctaaaagtaaaggtacatagacttggagtagatagctcaatt |
38862740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 36643010 - 36643052
Alignment:
| Q |
81 |
gactaccattataagtaaaggtacaaagacttggagtagatag |
123 |
Q |
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|||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
36643010 |
gactaccaataaaagtaaatgtacaaagacttggagtagatag |
36643052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 36643187 - 36643251
Alignment:
| Q |
234 |
gaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccg |
298 |
Q |
| |
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||||| |||||||||||||| || ||||| ||||||||| ||| |||||| ||||||| ||||| |
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| T |
36643187 |
gaatgcccaaactattcaactttggaaaggccaaaaagggatcagcacaaccgctttcaccaccg |
36643251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 55966578 - 55966666
Alignment:
| Q |
210 |
gtgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccg |
298 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||| | ||||| ||||||||| ||| |||||| | ||||||||||| |
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| T |
55966578 |
gtgcatcccttacctcacaaacacgaatgaccaaactactcaacttggtaaagcccaaaaagggctcagcacaaccgttttcatcaccg |
55966666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 19657759 - 19657805
Alignment:
| Q |
90 |
tataagtaaaggtacaaagacttggagtagatagttcaattgtgtca |
136 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||| ||||| |
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| T |
19657759 |
tataagtaaaggtacaaagacttgaagtagataactcaattttgtca |
19657805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 19674598 - 19674644
Alignment:
| Q |
90 |
tataagtaaaggtacaaagacttggagtagatagttcaattgtgtca |
136 |
Q |
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|||||||||||||||||||||||| |||||||| |||||| ||||| |
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| T |
19674598 |
tataagtaaaggtacaaagacttgaagtagataactcaattttgtca |
19674644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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