View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2016_high_1 (Length: 535)
Name: NF2016_high_1
Description: NF2016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2016_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 42451220 - 42450704
Alignment:
| Q |
1 |
catttcatagcagccagcacacagtactaaagtaatgatagaagctgataagtaaattatacaattaaatcaaaatcttagccaaatacacaggcaagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42451220 |
catttcatagcagccagcacacagtactaaagtaatgatagaagctgataagtaaattatacaattaaatcaaaatcttagccaaatacacag-caagca |
42451122 |
T |
|
| Q |
101 |
taaattaaacttttggattagtgaaatcacaaattaagctaatgatacgtgaaggaacatcatctagtgtcccaaatacaagacagaaaagaatcaacaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42451121 |
taaattaaacttttggattagtgaaatcacaaattaagctaatgatacgtgaaggaacatcatctagtgtcccaaatacaagacagaaaagaatcaacaa |
42451022 |
T |
|
| Q |
201 |
taaataagggactaaaacacgctttagaaccctactcctaggaacaatgtaaaggatcaagcaacatgcttgttccatctcttcctagaaattaagaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42451021 |
taaataagggactaaaacacgctttagaaccctactcctaggaacaatgtaaaggatcaagcaacatgcttgttccatctcttcctagaaattaagaatc |
42450922 |
T |
|
| Q |
301 |
agaaatcaacctaaaaatccaaactaacaaaccacacatcaaatcagttttcttcaacaacacaaagagcatctaattattccattttcattgcaataac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450921 |
agaaatcaacctaaaaatccaaactaacaaaccacacatcaaatcagttttcttcaacaacacaaagagcatctaattattccattttcattgcaataac |
42450822 |
T |
|
| Q |
401 |
cacacttaaccgttttcttttgcttctcatccaaaaccttacaacttccattacattccttacacatcacaaacctcaaacttccacacccttcacaaac |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42450821 |
cacacttaaccgttttcttttgcttctcatccaaaaccttacaacttccattacattccttacacatcacaaacctcaaacttccacacccttcacaaac |
42450722 |
T |
|
| Q |
501 |
tcctaatgcccttggaat |
518 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
42450721 |
tcctaatgcccttggaat |
42450704 |
T |
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