View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2016_high_4 (Length: 246)

Name: NF2016_high_4
Description: NF2016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2016_high_4
NF2016_high_4
[»] chr7 (12 HSPs)
chr7 (20-228)||(2114796-2115004)
chr7 (20-228)||(2066599-2066807)
chr7 (1-228)||(2099407-2099634)
chr7 (26-230)||(2139298-2139502)
chr7 (14-228)||(2126680-2126894)
chr7 (14-230)||(2073694-2073910)
chr7 (13-228)||(2244870-2245085)
chr7 (13-228)||(2136053-2136268)
chr7 (17-228)||(2691045-2691256)
chr7 (95-222)||(2057557-2057684)
chr7 (24-223)||(1695918-1696117)
chr7 (28-89)||(2057329-2057390)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 2114796 - 2115004
Alignment:
Q  20 tgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattttagttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  2114796 tgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggaatttctccggaaaataaactacgagaaaggttcagaaattttagttg 2114895  T
Q  120 tgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactgctattt 219  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2114896 tgaaagctcgcctatcttggatgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcgaaggtgcacaaggcgaaagagactgctattt 2114995  T
Q  220 gcatccatt 228  Q
    |||||||||    
T  2114996 gcatccatt 2115004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 2066599 - 2066807
Alignment:
Q  20 tgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattttagttg 119  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  2066599 tgaagcctagatcaagagacaacaacttggacagctgtgaaacttgtggtggaatttctccggaaaataaactacgagaaaggttcagaaattttagttg 2066698  T
Q  120 tgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactgctattt 219  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2066699 tgaaagcttacctatcttggatgggatttgagagtaattgaagtcattgtcggaaagatcaagaactcgaaggtgcacaaggcgaaagagactgctattt 2066798  T
Q  220 gcatccatt 228  Q
    |||||||||    
T  2066799 gcatccatt 2066807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2099407 - 2099634
Alignment:
Q  1 ttaggatgtaacatagctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaa 100  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||| | ||||    
T  2099407 ttaggatgtactatagctctgtagcctagatcaagagacaacaactttgacaactgtgaaacatgtggtggaatttctccagaaaataagctaagggaaa 2099506  T
Q  101 ggctcagatattttagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaag 200  Q
    || |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2099507 ggttcagatgttttaattgtgaaagctgacctatcttggacgggattggagagtaattgaagtcattgtcagaaagatcaagaactcgaaggtgtacaag 2099606  T
Q  201 gcgaaagagactgctatttgcatccatt 228  Q
    ||||||||||||||||||||||||||||    
T  2099607 gcgaaagagactgctatttgcatccatt 2099634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 2139298 - 2139502
Alignment:
Q  26 ctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattttagttgtgaaag 125  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||    
T  2139298 ctagatcaagagacaacaacttggacaactgtgaaacttgtggtggaatttctccggaaaataaactacgagaaaggttcagaaattttagttgtgaaag 2139397  T
Q  126 ctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactgctatttgcatcc 225  Q
    || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2139398 cttacctatcttggatggaatttgagagtaattgaagtcattgtcagaaagatcaagaactcgaagatgcacaaggcgaaagagactgctatttgcatcc 2139497  T
Q  226 attct 230  Q
    |||||    
T  2139498 attct 2139502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 2126680 - 2126894
Alignment:
Q  14 tagctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattt 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||  | |||||| |||||| |||    
T  2126680 tagctctgaagcctagatcaagagacaacaacttggacaactgtgaaacttgtggtggaatttctccagaaaagaagctcagggaaaggttcagatgttt 2126779  T
Q  114 tagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactg 213  Q
    || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2126780 taattgtgaaagctcacctatcttggatgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcgaaggtgcacaaggcgaaagagactg 2126879  T
Q  214 ctatttgcatccatt 228  Q
    |||||||||||||||    
T  2126880 ctatttgcatccatt 2126894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 2073694 - 2073910
Alignment:
Q  14 tagctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattt 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||  | |||||  |||||| |||    
T  2073694 tagctctgaagcctagatcaagagacaacaacttggacaactgtgaaacttgtggtggaatttctccagaaaagaagctcagggaaagtttcagatgttt 2073793  T
Q  114 tagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactg 213  Q
    || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2073794 taattgtgaaagctcacctatcttggatgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcgaaggtgcacaaggcgaaagagactg 2073893  T
Q  214 ctatttgcatccattct 230  Q
    |||||||||||||||||    
T  2073894 ctatttgcatccattct 2073910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 2245085 - 2244870
Alignment:
Q  13 atagctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatatt 112  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||| |||||||| |||  ||||||| | |||||||    
T  2245085 atagctctgaaacctagatcaagagacaacaacttggacaactgtgaaaattgttgtggaatttctcctgaaaataagctaatagaaaggtttagatatt 2244986  T
Q  113 ttagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagact 212  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| | || |||||| |||||||||||||||||    
T  2244985 ttagttgtgaaagctcacctatcttggacgggatttgagagtaattgaagtcgttgtcaaaaagatcaagtaatcgaaggtgtacaaggcgaaagagact 2244886  T
Q  213 gctatttgcatccatt 228  Q
    ||||||||||||||||    
T  2244885 gctatttgcatccatt 2244870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 2136053 - 2136268
Alignment:
Q  13 atagctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatatt 112  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||  || |||||||| ||| | |||    
T  2136053 atagctctgaaacctagatcaagagacaacaacttggacaactgggaaacttgtcgtggaatttctccagaaaataagttaagagaaaggttcaaaaatt 2136152  T
Q  113 ttagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagact 212  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  2136153 ttagttgtgaaagctcacctatcttggtagggattttagagtaattgaagttattatcagatagatcaagaactcgaaggtgcacaaggcgaaagagact 2136252  T
Q  213 gctatttgcatccatt 228  Q
    ||||||||||||||||    
T  2136253 gctatttgcatccatt 2136268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 2691256 - 2691045
Alignment:
Q  17 ctctgaagcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattttag 116  Q
    |||| ||||||||||||||||||  || ||| ||||||||||||| ||||||||| ||||||||||| ||||| ||| |||||||| ||||| |||||||    
T  2691256 ctcttaagcctagatcaagagactgcagcttggacaactgtgaaatttgtggtggaatttctccagagaataagctaagagaaaggttcagaaattttag 2691157  T
Q  117 ttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactgcta 216  Q
    ||| ||||||  |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  2691156 ttgcgaaagcatacctatcttggacgggattttagagtaattgaagttattatcagaaagatcaagaactcgaaggtgcacaagacgaaagagactgcta 2691057  T
Q  217 tttgcatccatt 228  Q
    ||||||||||||    
T  2691056 tttgcatccatt 2691045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 2057557 - 2057684
Alignment:
Q  95 gagaaaggctcagatattttagttgtgaaagctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtg 194  Q
    |||||||| ||||| |||||||| ||| ||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  2057557 gagaaaggttcagaaattttagtcgtggaagctcacctatcttagacgggattttggagtaattgaagtcattgtcagaaagatcaagaacttgaaggtg 2057656  T
Q  195 cacaaggcgaaagagactgctatttgca 222  Q
    ||||||| |||| |||||||||||||||    
T  2057657 cacaaggtgaaatagactgctatttgca 2057684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 1696117 - 1695918
Alignment:
Q  24 gcctagatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataaactacgagaaaggctcagatattttagttgtgaa 123  Q
    ||||||||||||||||||||| || || |  | ||||||||| ||||| ||||||||  ||| |    ||||||||||| | | ||||||||  || |||    
T  1696117 gcctagatcaagagacaacaagttggatagttttgaaacttgcggtggaatttctccgaaaagtttggtacgagaaaggtttaaatattttatctgcgaa 1696018  T
Q  124 agctgacctatcttggacgggatttgagagtaattgaagtcattgtcagaaagatcaagaactcaaaggtgcacaaggcgaaagagactgctatttgcat 223  Q
    ||||  |||||| | || |||||| ||||||| ||||| ||||| || | |||||||||||||| |||||||||||||||||| |||||| |||| ||||    
T  1696017 agctcgcctatcctagatgggattcgagagtatttgaaatcattatctgcaagatcaagaactcgaaggtgcacaaggcgaaacagactgttattagcat 1695918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2057329 - 2057390
Alignment:
Q  28 agatcaagagacaacaacttagacaactgtgaaacttgtggtggtatttctccagaaaataa 89  Q
    ||||||||||| | |||| |  |||||||||||||||||||||| ||||||| |||||||||    
T  2057329 agatcaagagagagcaacatgaacaactgtgaaacttgtggtggaatttctctagaaaataa 2057390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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