View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2016_low_4 (Length: 257)
Name: NF2016_low_4
Description: NF2016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2016_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 30286232 - 30286454
Alignment:
| Q |
11 |
cacagaagaggccttaggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaa |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286232 |
cacaggagaggccttaggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaa |
30286331 |
T |
|
| Q |
111 |
atgccaagtctagctccagaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30286332 |
atgccaagtctagctccagaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccagaaacctatctactccaacaagtttggcaatttctt |
30286431 |
T |
|
| Q |
211 |
tgagatcaccccagagaaaaatc |
233 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30286432 |
tgagatcaccccagagaaaaatc |
30286454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 30298697 - 30298916
Alignment:
| Q |
11 |
cacagaagaggccttaggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaa |
110 |
Q |
| |
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||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||| | |
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| T |
30298697 |
cacaggagaggccttaggaaagat---aggaggcagcagagccaggattcaaatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagac |
30298793 |
T |
|
| Q |
111 |
atgccaagtctagctccagaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctt |
210 |
Q |
| |
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|||| || ||||||||||||||||||| ||| || ||||||| |||| |||||||||||| || | |||||||||| |||||| |||||||||| ||||| |
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| T |
30298794 |
atgcaaaatctagctccagaaggagtggatcctccgaatctgcaccattcaacttgagaagccgcgaacctatctattccaacgagtttggcaacttctt |
30298893 |
T |
|
| Q |
211 |
tgagatcaccccagagaaaaatc |
233 |
Q |
| |
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||||||||| || |||||||||| |
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| T |
30298894 |
tgagatcactccggagaaaaatc |
30298916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 30303931 - 30304122
Alignment:
| Q |
45 |
agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc---cagaaggagtgaatc |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||| |||||||| || ||||||| ||| |
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| T |
30303931 |
agcagagccaggaagcaaatgtaatagtaaaagtatcaagggaacagattgaggaattgagcagacatgccaaatctagctctagtaggaggagtgcatc |
30304030 |
T |
|
| Q |
142 |
ttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatc |
233 |
Q |
| |
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| T |
30304031 |
ctccgaatctgcaccattcaacttgagaagtcgcaaacctatctattccaacgagtttggcaacttctttgagatcactccggagaaaaatc |
30304122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 30291277 - 30291384
Alignment:
| Q |
45 |
agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttc |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| || |
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| T |
30291277 |
agcagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcctc |
30291376 |
T |
|
| Q |
145 |
tgaatctg |
152 |
Q |
| |
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||||||| |
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|
| T |
30291377 |
cgaatctg |
30291384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 30314817 - 30314924
Alignment:
| Q |
45 |
agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttc |
144 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||| ||||||||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| || |
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| T |
30314817 |
agcagagccaggaagcagatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcctc |
30314916 |
T |
|
| Q |
145 |
tgaatctg |
152 |
Q |
| |
|
||||||| |
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|
| T |
30314917 |
cgaatctg |
30314924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 30314930 - 30315035
Alignment:
| Q |
128 |
agaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagaga |
227 |
Q |
| |
|
|||||||||| ||| || ||||||| |||| |||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| || |||| |
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| T |
30314930 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccatgaacctatctattccaacgagtttggcaacttctttgagatcactccggaga |
30315029 |
T |
|
| Q |
228 |
aaaatc |
233 |
Q |
| |
|
|||||| |
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|
| T |
30315030 |
aaaatc |
30315035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 30291390 - 30291495
Alignment:
| Q |
128 |
agaaggagtgaatcttctgaatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagaga |
227 |
Q |
| |
|
|||||||||| ||| || ||||||| |||| |||||||||||| || |||||||||| |||||| |||||||||| |||||||||||||| || |||| |
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| T |
30291390 |
agaaggagtgcatcctccgaatctgcaccattcaacttgagaagccgtgaacctatctattccaacgagtttggcaacttctttgagatcactccggaga |
30291489 |
T |
|
| Q |
228 |
aaaatc |
233 |
Q |
| |
|
|||||| |
|
|
| T |
30291490 |
aaaatc |
30291495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 46809603 - 46809789
Alignment:
| Q |
47 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttctg |
146 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| ||||||||||||||||| |||||||| | | ||||||| || ||||| | || || ||| |||| |
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| T |
46809603 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctcaaagagaagcatatcctctg |
46809702 |
T |
|
| Q |
147 |
aatctgaaccaatcaacttgagaaaccacaaacctatctactccaacaagtttggcaatttctttgagatcaccccagagaaaaatc |
233 |
Q |
| |
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| |||| ||| ||||||||||||||| ||| || |||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
46809703 |
agtctggacccttcaacttgagaaaccgcaaccccctctattccaacaagtttggcaagttctttgagattaccccagagaaaaatc |
46809789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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