View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_high_11 (Length: 284)
Name: NF20170_high_11
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 41011914 - 41012182
Alignment:
| Q |
1 |
gtacaaattcatttatcaatgattaacatcatctaaacgacatttttctttaacttaatgaaatgaatcaaaagttactagaatgaaattaatcaaaagt |
100 |
Q |
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| T |
41011914 |
gtacaaattcatttatcaatgattaacatcatctaaacgacatttttctttaacttaatgaaatgaatcaaaagttactagaatgaaattaatcaaaagt |
41012013 |
T |
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| Q |
101 |
tactaaaatgaaactaatcaaaagttactagattaaaagctatttaatcgaagaatacatcagtggatttatcctttctttccagtgttaccacatttgc |
200 |
Q |
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| T |
41012014 |
tactaaaatgaaactaatcaaaagttactagattaaaagctatttaatcgaagaatacatcagtggatttatcctttctttccagtgttaccacatttgc |
41012113 |
T |
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| Q |
201 |
caacaacgatgatggaga-ggaaaaaacaactccattcatttatgttttcaatcaaacttccaaattct |
268 |
Q |
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| T |
41012114 |
caacaacgatgatggagagggaaaaaaaaactccattcatttatgttttcaatcaaacttccaaattct |
41012182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 12111038 - 12111148
Alignment:
| Q |
151 |
aagaatacatcagtggatttatcctttctttccagtgttaccacatttgccaacaacgatgatggagaggaaaaaacaactccattcatttatgttttca |
250 |
Q |
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| T |
12111038 |
aagagtacatcaggggatttatccttttattgcact-ttcccacatttgccaacaatgatgatggag-ggaaaaaacaactccattcatttatgtgttca |
12111135 |
T |
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| Q |
251 |
atcaaacttccaa |
263 |
Q |
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| T |
12111136 |
atcaaacttccaa |
12111148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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