View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_high_12 (Length: 277)
Name: NF20170_high_12
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 41379621 - 41379870
Alignment:
| Q |
1 |
gaatttcgatcttaatttggattttggtctctctgatgacctcataggaatcgtgtcacactgcacttgataagaaataagacacagaaagacaaacaga |
100 |
Q |
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| T |
41379621 |
gaatttcgatcttaatttggatttcggtctctctgatgagctcacaggaatcgtgtcacgctgcacttgata--------gacacagaaagacaaacaga |
41379712 |
T |
|
| Q |
101 |
agaagaatggaaagacgaattccggtgttgaaaaattacacgcctttagatttgtaactagcttcaggctctttctatcaatgtagtagttttttctttt |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41379713 |
agaagaatggaaagacgatttccggtgttgaaaaattacacgcctttagatttgtaactagcttc-ggctctttctatcaatgtagtagttttttctttt |
41379811 |
T |
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| Q |
201 |
ggctttccaacaaaactagaaatgctaatcaattagagaatatattctattacacaact |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41379812 |
ggctttccaacaaaactagaaatgctaatcaattagagaatatattctattacacaact |
41379870 |
T |
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