View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_high_3 (Length: 585)
Name: NF20170_high_3
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Original strand, 23159616 - 23160162
Alignment:
| Q |
16 |
aatatgcaggtccttggtgtattttcggagacttcaatgatataatggataatagtgaaaaaagaggacgtgctacaagaccgcaatggttaataaacga |
115 |
Q |
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| T |
23159616 |
aatatgcaggtccttggtgtattttcggagacttcaatgatataatggataataatgaaaaaagaggacgtgctacaagaccgcaatggttaataaacga |
23159715 |
T |
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| Q |
116 |
ctttcgtcaa-gctattcttgactctggtctatcagatgttacagtataaggttatccgctcacctggtttaaaagcggacacctcgtgcggttgaggaa |
214 |
Q |
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| T |
23159716 |
ctttcgtcaaagctgttcttgactctggtctatcagatgttacaatggaaggttatccgctcacctgatttaaaagcggacacctcgtgcggttgaggaa |
23159815 |
T |
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| Q |
215 |
aggttagatcgagcccttgctattaatgcttggtttaatttattttcaaatgcactgttagaaaatcttgcagctccggtttttgaccattaccttgttc |
314 |
Q |
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| T |
23159816 |
aggttagatcgagcccttgctattaatgcttggtttaatttatttccgaatgcactgttagaaaatcttgcagctccggtttctgaccattaccctgttc |
23159915 |
T |
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| Q |
315 |
tcttgcaccgttgctatgtgtctcggcctcctgctcctccttgcgaattcagatacgaaaatgcgtggcagctggagacgagttttaaggaaatagtaac |
414 |
Q |
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| T |
23159916 |
tcttgcacc--------gtgtctcgccctcctgctcctcctcgcaaattcagatacgaaaatgcgtgacagctggagacgagttttaaggaaatagtaat |
23160007 |
T |
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| Q |
415 |
tgattcttggaatgtgcatctaactgattctattatttctaagttgtctgcttgtgtagatgatattttggtgtggaccaacacccattgtcgcaagttg |
514 |
Q |
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| T |
23160008 |
tgattcttggaatgtgcatctaactgattctattgtttctaagttgtctgcttgtgcagatgatattttggtgtggaccaacacccattgccgcaagttg |
23160107 |
T |
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| Q |
515 |
aaatatgagattgaggactgtcatcgttagttgcagcttcttcgtggtaataatg |
569 |
Q |
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| T |
23160108 |
aaatctgagattgaggattgtcatcgtcagttgcagcttcttcgtggtaataatg |
23160162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 8865780 - 8865713
Alignment:
| Q |
194 |
acacctcgtgcggttgaggaaaggttagatcgagcccttgctattaatgcttggtttaatttattttc |
261 |
Q |
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| T |
8865780 |
acaccgcgtgcagtggaagaaaggttagatcgtgctcttgctaataattcttggttgaatttattttc |
8865713 |
T |
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