View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_high_4 (Length: 420)
Name: NF20170_high_4
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 38048260 - 38047852
Alignment:
| Q |
1 |
tctccaaaaattaatatatatattccgattcctagaaaccaaaaaagtcttgagtgtttgtgagagaaaagttaatggctacggtagtgaacgagagtag |
100 |
Q |
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| T |
38048260 |
tctccaaaaattaatatatatattccgattcctagaaaccaaaaaagtcttgagtgtttgtgagagaaaagttaatggctacggtagtgaacgagagtag |
38048161 |
T |
|
| Q |
101 |
ggattcagaattgaagaaaggatggatggaaaactctttgtcctctatatcaactccacctcttcagcttttggccttagttggtatagttgtgttctta |
200 |
Q |
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| T |
38048160 |
ggatttagaattgaagaaaggatggatggaaaactctttgtcctctatatcaactccacctcttcagcttttggccttagttggtatagttgtgttctta |
38048061 |
T |
|
| Q |
201 |
ttgtggatttcatcatatatgaacatgcaatcaactagcacaaacctcaacttgttcctcttgtttttgacacttctcattacactcatctctctatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38048060 |
ttgtggatttcatcatatatgaacatgcaatcaactagcacaaacctcaacttgttcctcttgtttttgacacttctcattacactcatctctctatttg |
38047961 |
T |
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| Q |
301 |
gacgatacatggctccagcatcaaattcaaatgttatagaaggtggagatgatggggttcaatccacttggggatcagttgctttgcttgtgtttctttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38047960 |
gacgatacatggctccagcatcaaattcaaatgttatagaaggtggagatgatggggttcaatccacttggggatcagttgctttgcttgtgtttctttt |
38047861 |
T |
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| Q |
401 |
ggttttcat |
409 |
Q |
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| T |
38047860 |
ggttttcat |
38047852 |
T |
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