View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20170_high_7 (Length: 381)

Name: NF20170_high_7
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20170_high_7
NF20170_high_7
[»] chr6 (12 HSPs)
chr6 (21-315)||(33869488-33869785)
chr6 (21-189)||(25549404-25549569)
chr6 (21-189)||(26087159-26087324)
chr6 (310-371)||(33866023-33866084)
chr6 (21-200)||(29300419-29300602)
chr6 (45-104)||(34257873-34257932)
chr6 (37-164)||(34274359-34274487)
chr6 (145-200)||(25490554-25490609)
chr6 (21-96)||(29148904-29148979)
chr6 (178-311)||(29145545-29145679)
chr6 (146-200)||(29151829-29151883)
chr6 (21-69)||(25526451-25526499)
[»] chr4 (1 HSPs)
chr4 (139-297)||(54294732-54294892)
[»] chr7 (1 HSPs)
chr7 (221-323)||(42446574-42446677)
[»] chr8 (1 HSPs)
chr8 (139-242)||(5709589-5709693)
[»] chr3 (1 HSPs)
chr3 (139-242)||(2885726-2885830)
[»] chr2 (1 HSPs)
chr2 (139-242)||(16186218-16186322)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 33869785 - 33869488
Alignment:
Q  21 ttccgtatataagttatttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataag---actatgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||    
T  33869785 ttccgtatataagttatttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataacttaagtatgc 33869686  T
Q  118 aaacagaacgagtaaacatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagcacaattgacaagtc 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869685 gaacagaacgagtaaacatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagcacaattgacaagtc 33869586  T
Q  218 gcattgtttactaggtaatatcccaataaccacaaccatatacttcttttgaaaacaataaaaacaattaactacttatttctctaattggaagtatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869585 gcattgtttactaggtaatatcccaataaccacaaccatatacttcttttgaaaacaataaaaacaattaactacttatttctctaattggaagtatg 33869488  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 25549404 - 25549569
Alignment:
Q  21 ttccgtatataagttatttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataagactatgcaaa 120  Q
    |||| ||||||| |||||||||| |||| |||||||||||| |||||||||||||| ||| || |||||||||||| |||||||||||||  | ||| ||    
T  25549404 ttccatatataaattatttctacgtaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagataag--tttgcgaa 25549501  T
Q  121 cagaacgagtaaacatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaa 189  Q
     | ||||||| || ||  ||| | |||||||||||||||||| ||||||||| ||| | ||||||||||    
T  25549502 taaaacgagt-aagattcaaactaaaaatgcaaaagcaagatcaagtagtttattaatatacttgacaa 25549569  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 26087159 - 26087324
Alignment:
Q  21 ttccgtatataagttatttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataagactatgcaaa 120  Q
    |||| ||||||| |||||||||| |||| |||||||||||| |||||||||||||| ||| || |||||||||||| ||||||||||| |  | ||| ||    
T  26087159 ttccatatataaattatttctacttaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagatatg--tttgcgaa 26087256  T
Q  121 cagaacgagtaaacatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaa 189  Q
     | ||||||| || ||  ||| | |||||||||||||||||| ||||||||| ||||| ||||||||||    
T  26087257 taaaacgagt-aagattcaaactaaaaatgcaaaagcaagatcaagtagtttcttagtatacttgacaa 26087324  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 33866084 - 33866023
Alignment:
Q  310 agtatgctttccttcttcaggttcaccaagagaaaaaataaatattcttacttccatctctg 371  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33866084 agtatgctttccttcttcaggtacaccaagagaaaaaataaatattcttacttccatctctg 33866023  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 29300602 - 29300419
Alignment:
Q  21 ttccgtatataagttatttctacataaaacta----gaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataagactatg 116  Q
    |||| ||||||||||||| ||||||| |||||    |||| |||| | |||| |||||| |||| || |||||||||||| ||| |||||||||  | ||    
T  29300602 ttccatatataagttattactacatagaactaaagggaggccattcgataaaagcaaaatatcattcattttattgatatagaagccagataag--tttg 29300505  T
Q  117 caaacagaac--gagtaaacatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgata 200  Q
     ||| | |||  ||||||||||  ||||| |||||||||||||||| | |||||||||  ||||||||||||||| ||||||||||    
T  29300504 aaaataaaacaagagtaaacattcaaaataaaaatgcaaaagcaagttcaagtagtttcctagtttacttgacaataattgtgata 29300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 34257873 - 34257932
Alignment:
Q  45 taaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaacca 104  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  34257873 taaaactagagatcattcggtaaaggcaaaagatcaatctttttattgatatagaaacca 34257932  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 34274359 - 34274487
Alignment:
Q  37 tttctacataaaactagaggtcatttggtaaaggcaaaagatcactc-tttttattgatattgaaaccagataagactatgcaaacagaacg--agtaaa 133  Q
    |||| |||||||||||||||||||| |||||||| ||||||||| || |||||| |||||| ||||||| | |||  | |||||| | || |  ||||||    
T  34274359 tttccacataaaactagaggtcattcggtaaaggtaaaagatcaatcttttttactgatatagaaaccacacaag--tttgcaaataaaatgtaagtaaa 34274456  T
Q  134 catggaaaatcaaaatgcaaaagcaagataa 164  Q
    |||  ||||| ||||||||||||||||||||    
T  34274457 cattcaaaataaaaatgcaaaagcaagataa 34274487  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 25490609 - 25490554
Alignment:
Q  145 aaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgata 200  Q
    |||||||||||||||||| |||||| || ||||| || ||||||| ||||||||||    
T  25490609 aaaatgcaaaagcaagatcaagtagattcttagtataattgacaataattgtgata 25490554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 29148904 - 29148979
Alignment:
Q  21 ttccgtatataagttatttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatat 96  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||  || |||||| ||||| ||  |||||||||||    
T  29148904 ttccatatataagttatttctacataaaactaaagaccatttgacaacggcaaatgatcattcaatttattgatat 29148979  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 29145679 - 29145545
Alignment:
Q  178 tttacttgacaacaattgtgataagcacaattgacaagtcgcattgtttactaggtaatatcccaataaccacaaccatatacttctt-ttgaaaacaat 276  Q
    |||||||||||| |||||||||| |||||||||||||  |   |||  ||  | |||||||| ||| |||||||| ||||||| ||||  ||| |||||     
T  29145679 tttacttgacaataattgtgatatgcacaattgacaaaccagtttgcataaaatgtaatatctcaacaaccacaatcatatacctcttggtgataacaag 29145580  T
Q  277 aaaaacaattaactacttatttctctaattggaag 311  Q
    ||||||||||| ||||||  | ||| |||||||||    
T  29145579 aaaaacaattagctacttgctcctccaattggaag 29145545  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 29151829 - 29151883
Alignment:
Q  146 aaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgata 200  Q
    ||||||||||||||||| ||  ||| | |||||||||||||||| ||||||||||    
T  29151829 aaatgcaaaagcaagatcaaccagtgtcttagtttacttgacaataattgtgata 29151883  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 25526451 - 25526499
Alignment:
Q  21 ttccgtatataagttatttctacataaaactagaggtcatttggtaaag 69  Q
    |||| |||||||||| ||||||| ||||||||||||| ||| |||||||    
T  25526451 ttccatatataagttgtttctacttaaaactagaggtaattgggtaaag 25526499  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 54294732 - 54294892
Alignment:
Q  139 aaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagcacaattgacaagtcgcattgtttactaggtaatat 238  Q
    ||||| ||||||| |||| ||||| ||||||||| |||||| | || | |  |||||||| || |||||||||| |||| | |||| ||| ||||||||     
T  54294732 aaaataaaaatgctaaagtaagatcaagtagtttcttagttcaattaaaattaattgtgacaaacacaattgacgagtcactttgtctacaaggtaatac 54294831  T
Q  239 cccaa-taaccacaaccatatacttcttt-tgaaaacaataaaaacaattaactacttatt 297  Q
    ||||| ||||||||| |||||| |||||| || |||||| || |||||||||| |||||||    
T  54294832 cccaaataaccacaatcatataattctttgtgtaaacaagaataacaattaacaacttatt 54294892  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 42446677 - 42446574
Alignment:
Q  221 ttgtttactaggtaatatcccaataaccacaaccatatacttcttt-tgaaaacaataaaaacaattaactacttatttctctaattggaagtatgcttt 319  Q
    |||| ||| |||||||||| ||| |||||||| ||||||| ||||  ||||||||| |||||||||||| || ||||| ||| ||||||||| ||| |||    
T  42446677 ttgtatacaaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaattggaagaatgtttt 42446578  T
Q  320 cctt 323  Q
    ||||    
T  42446577 cctt 42446574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 5709589 - 5709693
Alignment:
Q  139 aaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagca-caattgacaagtcgcattgtttactaggtaata 237  Q
    ||||| |||||||||||||||||| |||||||||  || ||||  |||||  ||||||| |||||| || |||| ||||| | |||||||| | ||||||    
T  5709589 aaaataaaaatgcaaaagcaagatcaagtagtttcataatttaaatgacatgaattgtggtaagcaccatttgagaagtcactttgtttacaaagtaata 5709688  T
Q  238 tccca 242  Q
    |||||    
T  5709689 tccca 5709693  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 2885830 - 2885726
Alignment:
Q  139 aaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagca-caattgacaagtcgcattgtttactaggtaata 237  Q
    ||||| |||||||||||||||||| |||||||||  || ||||  |||||  ||||||| |||||| || |||| ||||| | |||||||| | ||||||    
T  2885830 aaaataaaaatgcaaaagcaagatcaagtagtttcataatttaaatgacatgaattgtggtaagcaccatttgagaagtcactttgtttacaaagtaata 2885731  T
Q  238 tccca 242  Q
    |||||    
T  2885730 tccca 2885726  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 16186218 - 16186322
Alignment:
Q  139 aaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataagca-caattgacaagtcgcattgtttactaggtaata 237  Q
    ||||| |||||||||||||||||| |||||||||  || ||||  |||||  ||||||| |||||| || |||| ||||| | |||||||| | ||||||    
T  16186218 aaaataaaaatgcaaaagcaagatcaagtagtttcataatttaaatgacatgaattgtggtaagcaccatttgagaagtcactttgtttacaaagtaata 16186317  T
Q  238 tccca 242  Q
    |||||    
T  16186318 tccca 16186322  T

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