View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_low_14 (Length: 258)
Name: NF20170_low_14
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 34780062 - 34780296
Alignment:
| Q |
8 |
tgcagaatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttctt |
107 |
Q |
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|||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34780062 |
tgcaaaatcaaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttctt |
34780161 |
T |
|
| Q |
108 |
caccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgttta |
207 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||| |
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| T |
34780162 |
caccacactcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgttta |
34780261 |
T |
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| Q |
208 |
aacttttccttcaaacccatgaagctacttccttt |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34780262 |
aacttttccttcaaacccatgaagctacttccttt |
34780296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 34756074 - 34755840
Alignment:
| Q |
8 |
tgcagaatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttctt |
107 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
34756074 |
tgcaaaatcaaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttctt |
34755975 |
T |
|
| Q |
108 |
caccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgttta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34755974 |
caccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgttta |
34755875 |
T |
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| Q |
208 |
aacttttccttcaaacccatgaagctacttccttt |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34755874 |
aacttttccttcaaacccatgaagctacttccttt |
34755840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 34764050 - 34763816
Alignment:
| Q |
8 |
tgcagaatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttctt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||| |
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| T |
34764050 |
tgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttctt |
34763951 |
T |
|
| Q |
108 |
caccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgttta |
207 |
Q |
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|
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||| |
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| T |
34763950 |
caccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgttta |
34763851 |
T |
|
| Q |
208 |
aacttttccttcaaacccatgaagctacttccttt |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
34763850 |
aacttttccttcaaacccatgaagctacttccttt |
34763816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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