View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20170_low_17 (Length: 248)
Name: NF20170_low_17
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_low_17 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 3734087 - 3733844
Alignment:
| Q |
5 |
agagaagaagaaggatccaacaagttcctcggtcaaatgttatatgttaggacaaaatcatcttgttctacacgatttcttaatggtgtagctacttttg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3734087 |
agagaagaagaaggatccaacaagttcctcggtcaaatgttatatgttaggacaaaatcatcttgttctacaagatttcttaatggtgtagctacttttg |
3733988 |
T |
|
| Q |
105 |
tcataacggacgatctcattggtaagtgataagtatataattaacatatacttttgtcataaccgataaattcatataatttttatgcatagggtttctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3733987 |
tcataacggacgatctcattggtaagtgataagtatataattaacatatacttttgtcataaccgataaattcatataatttttatgcataggggttctt |
3733888 |
T |
|
| Q |
205 |
catataatagacaaacattaattttcattggtaagtgataagta |
248 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3733887 |
catataatagacaaacattaattctcattggtaagtgataagta |
3733844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 3733865 - 3733824
Alignment:
| Q |
118 |
tctcattggtaagtgataagtatataattaacatatactttt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3733865 |
tctcattggtaagtgataagtatataattaaaatatactttt |
3733824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 3734226 - 3734260
Alignment:
| Q |
120 |
tcattggtaagtgataagtatataattaacatata |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3734226 |
tcattggtaagtgattagtatataattaacatata |
3734260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 22625509 - 22625553
Alignment:
| Q |
78 |
gatttcttaatggtgtagctacttttgtcataacggacgatctca |
122 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
22625509 |
gatttgttaatggtgtagctacatttgtcataactgatgatctca |
22625553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 22633661 - 22633617
Alignment:
| Q |
78 |
gatttcttaatggtgtagctacttttgtcataacggacgatctca |
122 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
22633661 |
gatttgttaatgatgtagctacttttgtcataactgatgatctca |
22633617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 33761034 - 33761079
Alignment:
| Q |
29 |
ttcctcggtcaaatgttatat-gttaggacaaaatcatcttgttct |
73 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
33761034 |
ttcctcggtcaaatgttattttgttaggacagaatcatcttgttct |
33761079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University