View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_low_19 (Length: 236)
Name: NF20170_low_19
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 42377975 - 42378154
Alignment:
| Q |
42 |
catgagaacagccttaacatgagtgcttgtgagtggagtcttagaatcaccctcctccttcaaatacaacaaaaactgcaaaaaatccttactttcatta |
141 |
Q |
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| T |
42377975 |
catgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaagtccctactcccatta |
42378074 |
T |
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| Q |
142 |
ttttccttcccctccacgtccttctttacacgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagc |
221 |
Q |
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| T |
42378075 |
ttctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagc |
42378154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 42393896 - 42394067
Alignment:
| Q |
45 |
gagaacagccttaacatgagtgcttgtgagtggagtcttagaatcaccctcctccttcaaatacaacaaaaactgcaaaaaatccttactttcattattt |
144 |
Q |
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| T |
42393896 |
gagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaatccttactttc---actc |
42393992 |
T |
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| Q |
145 |
tccttcccctccacgtccttctttacacgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaa |
219 |
Q |
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| T |
42393993 |
tcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaa |
42394067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42380248 - 42380291
Alignment:
| Q |
1 |
caaagtgacaagtagttttatcttataagttaagagctccacat |
44 |
Q |
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| T |
42380248 |
caaagtgacaagtagttttatcttataagttaagagctccacat |
42380291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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