View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_low_2 (Length: 681)
Name: NF20170_low_2
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 26804527 - 26804105
Alignment:
| Q |
16 |
aaaagatttcaataccaaaaaacataatgaaaactccaactttggagaggaaaaaatcaaagagttttaaagaagggtcttttggtattgaagctgcttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804527 |
aaaagatttcaataccaaaaaacataatgaaaactccaactttggagaggaaaaaatcaaagagttttaaagaagggtcttttggtattgaagctgcttc |
26804428 |
T |
|
| Q |
116 |
attgagttattcttcttctttgatcactgattcaccaggaagcatagctgctgttagaagggaacaagtggcacttcagcaagcacaaaggaaaatgaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804427 |
attgagttattcttcttctttgatcactgattcaccaggaagcatagctgctgttagaagggaacaagtggcacttcagcaagcacaaaggaaaatgaag |
26804328 |
T |
|
| Q |
216 |
attgctcattatggaagatcaaaatctgctaaatttgaaagagtttttcctattgatccttcaagtgctcttgattcaaagactactaatcaagaggaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804327 |
attgctcattatggaagatcaaaatctgctaaatttgaaagagtttttcctattgatccttcaagtgctcttgattcaaagactactaatcaagaggaga |
26804228 |
T |
|
| Q |
316 |
agagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaaagatttataattctaaaagaaaattattagaaagtcaatcaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26804227 |
agagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaaagatt--taattctaaaagaaaattattagaaagtcaatcaat |
26804130 |
T |
|
| Q |
416 |
tataattgtctgaatattaaaaatg |
440 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26804129 |
tataattgtctgaatattaaaaatg |
26804105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 439 - 675
Target Start/End: Complemental strand, 26804048 - 26803812
Alignment:
| Q |
439 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcatatgtaccctttttgatacttagtgcaattttgttttatct |
538 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
26804048 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcataggtaccctttttgatatttagtgcaattttgttttatct |
26803949 |
T |
|
| Q |
539 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
638 |
Q |
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| T |
26803948 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
26803849 |
T |
|
| Q |
639 |
agtaagtccctacccctctctctctcacacacctatg |
675 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26803848 |
agtaagtccctacccctctctctctcacacacctatg |
26803812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 32591049 - 32590885
Alignment:
| Q |
16 |
aaaagatttcaataccaaaaaacataatgaaaactccaactttggagaggaaaaaatcaaagagttttaaagaagggtcttttggtattgaagctgcttc |
115 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||||||||||| || || ||||||| ||||||||| |||| ||||||||||||| ||||| |
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| T |
32591049 |
aaaagattgcaataccaaaagacataatgaaaactcctactttggagagaaagaagtcaaagaattttaaagatgggtattttggtattgaa---gcttc |
32590953 |
T |
|
| Q |
116 |
attgagttattcttcttctttgatcactgattcacca-ggaagcatagctgctgttagaagggaacaa |
182 |
Q |
| |
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||||||||||||||||||||||||||||||||| | | |||| |||| ||||| |||||||| ||||| |
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|
| T |
32590952 |
attgagttattcttcttctttgatcactgattctcgagggaaacatatctgctattagaaggaaacaa |
32590885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 563 - 645
Target Start/End: Complemental strand, 18417082 - 18416999
Alignment:
| Q |
563 |
tgtctcttttgat-aaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgacaagtaagt |
645 |
Q |
| |
|
|||||||||| || ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18417082 |
tgtctctttttattaaatagatcccatctatattgcttatcatgatgaggaatggggagttccagttcatgatgacaagtaagt |
18416999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 18418005 - 18417858
Alignment:
| Q |
114 |
tcattgagttattcttcttctttgatcactgattcaccaggaagcatagctgctgttagaagggaacaagtggcacttcagcaagcacaaaggaaaatga |
213 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||| || || |||| | || || ||||| ||||| | ||| | || || |||||||||| |
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| T |
18418005 |
tcattgagttactcttcaaatttgatcactgattcaccagggagtattgctggcttgaggagagaacagatggcattgcagaatgctcagaggaaaatga |
18417906 |
T |
|
| Q |
214 |
agattgctcattatggaagatcaaaatctgctaaatttgaaagagttt |
261 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| |||| |
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|
| T |
18417905 |
agattgctcattatggaagatcaaagtctgcaaaatttgaaagtgttt |
18417858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 642
Target Start/End: Complemental strand, 54546851 - 54546811
Alignment:
| Q |
602 |
catgatgaagaatggggagttccagttcatgatgacaagta |
642 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |
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| T |
54546851 |
catgatgaagaatggggagttccagtacatgacgacaagta |
54546811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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