View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20170_low_22 (Length: 223)

Name: NF20170_low_22
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20170_low_22
NF20170_low_22
[»] chr4 (7 HSPs)
chr4 (15-126)||(22691060-22691171)
chr4 (18-117)||(22988694-22988793)
chr4 (20-117)||(22716424-22716521)
chr4 (21-98)||(6659561-6659638)
chr4 (15-130)||(24667430-24667551)
chr4 (19-87)||(13085321-13085389)
chr4 (27-116)||(19935271-19935359)
[»] chr2 (13 HSPs)
chr2 (15-130)||(15129167-15129282)
chr2 (15-129)||(27952550-27952664)
chr2 (19-129)||(31636085-31636195)
chr2 (15-129)||(33655376-33655490)
chr2 (20-129)||(22011182-22011291)
chr2 (15-129)||(27956386-27956500)
chr2 (20-99)||(31633884-31633963)
chr2 (15-130)||(22264185-22264299)
chr2 (15-129)||(35682004-35682117)
chr2 (20-129)||(2155718-2155826)
chr2 (19-67)||(8781323-8781371)
chr2 (20-87)||(2165715-2165782)
chr2 (84-129)||(1517980-1518026)
[»] chr8 (11 HSPs)
chr8 (15-129)||(22512273-22512387)
chr8 (15-126)||(42891896-42892007)
chr8 (15-99)||(23573363-23573447)
chr8 (19-129)||(23570338-23570447)
chr8 (28-129)||(37189617-37189717)
chr8 (15-87)||(18468508-18468580)
chr8 (23-104)||(6845112-6845193)
chr8 (15-87)||(22922076-22922148)
chr8 (84-129)||(24730821-24730866)
chr8 (43-104)||(42890182-42890243)
chr8 (28-117)||(18180926-18181014)
[»] chr7 (12 HSPs)
chr7 (20-129)||(859386-859495)
chr7 (20-129)||(1217390-1217499)
chr7 (20-129)||(1220663-1220772)
chr7 (15-129)||(13882910-13883022)
chr7 (15-129)||(13886412-13886526)
chr7 (15-129)||(4300306-4300420)
chr7 (80-129)||(4303207-4303256)
chr7 (84-129)||(4888947-4888992)
chr7 (92-129)||(29175573-29175610)
chr7 (85-129)||(1883290-1883334)
chr7 (85-129)||(30217608-30217652)
chr7 (85-129)||(13466547-13466590)
[»] chr3 (9 HSPs)
chr3 (20-129)||(43306902-43307011)
chr3 (15-129)||(43304183-43304297)
chr3 (15-129)||(53012778-53012890)
chr3 (15-129)||(3063962-3064078)
chr3 (28-121)||(3069113-3069206)
chr3 (27-87)||(45168530-45168590)
chr3 (85-129)||(365846-365890)
chr3 (41-87)||(19795060-19795106)
chr3 (85-118)||(2472952-2472985)
[»] chr1 (7 HSPs)
chr1 (15-129)||(50857670-50857783)
chr1 (22-129)||(13444217-13444324)
chr1 (62-129)||(13441861-13441928)
chr1 (15-67)||(42071546-42071598)
chr1 (20-87)||(8931016-8931083)
chr1 (85-129)||(31915338-31915382)
chr1 (85-129)||(43681248-43681292)
[»] chr5 (6 HSPs)
chr5 (15-129)||(21849196-21849310)
chr5 (20-98)||(40779017-40779095)
chr5 (27-129)||(21845127-21845229)
chr5 (27-129)||(21857122-21857224)
chr5 (20-130)||(19501180-19501289)
chr5 (92-129)||(26140144-26140181)
[»] chr6 (9 HSPs)
chr6 (41-129)||(29341043-29341131)
chr6 (23-129)||(11194416-11194521)
chr6 (15-129)||(18726883-18726995)
chr6 (25-120)||(11190259-11190353)
chr6 (44-99)||(18203263-18203318)
chr6 (15-87)||(3535827-3535899)
chr6 (15-87)||(3542038-3542110)
chr6 (23-87)||(30049707-30049771)
chr6 (23-87)||(30051994-30052058)
[»] scaffold0110 (1 HSPs)
scaffold0110 (23-87)||(46938-47002)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 22691171 - 22691060
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22691171 aaccagtgggctgaaataaaataaaacgaaataataatacaaagttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 22691072  T
Q  115 aaccctcctgca 126  Q
    ||||||||||||    
T  22691071 aaccctcctgca 22691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 22988694 - 22988793
Alignment:
Q  18 ctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaac 117  Q
    |||||||| |||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  22988694 ctgtgggctgaaataaaataaaaagaaataataatagaaagttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaac 22988793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 22716521 - 22716424
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaac 117  Q
    |||||| |||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  22716521 gtgggctgaaataaaataaaaagaaataataatagaaagttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaac 22716424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 6659561 - 6659638
Alignment:
Q  21 tgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatact 98  Q
    ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  6659561 tgggccgaaataaaataaaacaaaataataatagaaagttctagaaaattactaagatttggctaaataataaatact 6659638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 24667551 - 24667430
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggtt------ctagaaaattactaagatttggctaaataataaatactactaaattat 108  Q
    |||| |||| |||||||||||||||| |||||||||||| || | |      ||| |||||||||| |||||||||||||||||| |||||||||||||     
T  24667551 aacccgtggaccgaaataaaataaaatgaaataataatagaaagatgaattactaaaaaattactacgatttggctaaataataactactactaaattaa 24667452  T
Q  109 taataaaaccctcctgcatcat 130  Q
    ||||||| ||||||||||||||    
T  24667451 taataaagccctcctgcatcat 24667430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 13085321 - 13085389
Alignment:
Q  19 tgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| |||||||||||| ||||||||||||||||| || ||||||||| ||||||||||| ||||||||    
T  13085321 tgtgagccgaaataaaacaaaacgaaataataatagaaagttctagaatattactaagatgtggctaaa 13085389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 19935359 - 19935271
Alignment:
Q  27 gaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaa 116  Q
    ||||||||| ||||||||||||||||| || |||||  ||||| | ||||||||| ||||| |  |||||||||||||||| ||| ||||    
T  19935359 gaaataaaacaaaacgaaataataatagaaagttctgaaaaatgattaagatttgactaaa-ataaaatactactaaattactaagaaaa 19935271  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 15129282 - 15129167
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15129282 aacccgtgggccgaaataaaataaaacgaaataataataggaagttctagaaaattactaagatttggttaaataataaatactactaaattattaataa 15129183  T
Q  115 aaccctcctgcatcat 130  Q
    ||||||||||||||||    
T  15129182 aaccctcctgcatcat 15129167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 27952550 - 27952664
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27952550 aacccgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggataaataataaatactactaaattattaataa 27952649  T
Q  115 aaccctcctgcatca 129  Q
    ||||||||| |||||    
T  27952650 aaccctcctacatca 27952664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 31636195 - 31636085
Alignment:
Q  19 tgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaacc 118  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31636195 tgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaacc 31636096  T
Q  119 ctcctgcatca 129  Q
    ||||| |||||    
T  31636095 ctcctacatca 31636085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 33655490 - 33655376
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  33655490 aacccgtgggccgaaataaaataaaacaaaataataatagaaagttctagaaaattactaagatttggctaaataatagatactactaaattaccaataa 33655391  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  33655390 aaccctcctgcatca 33655376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 22011291 - 22011182
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  22011291 gtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattaaagataaaaccc 22011192  T
Q  120 tcctgcatca 129  Q
    ||||||||||    
T  22011191 tcctgcatca 22011182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 27956386 - 27956500
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||  |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  27956386 aacccgtgggctaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggataaataataaatactactaaattactaataa 27956485  T
Q  115 aaccctcctgcatca 129  Q
    ||||||||| |||||    
T  27956486 aaccctcctacatca 27956500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 31633963 - 31633884
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatacta 99  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31633963 gtgggccgaaataaaataaaatgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatacta 31633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 22264299 - 22264185
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||| |||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||| |  |||||||||||||||| ||| ||    
T  22264299 aacccgtgagccgaaataaaacaaaacaaaataataatagaaagttctagaaaattactaagatttggctaaa-ataaaatactactaaattactaagaa 22264201  T
Q  115 aaccctcctgcatcat 130  Q
    || ||| |||||||||    
T  22264200 aatccttctgcatcat 22264185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 35682117 - 35682004
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||||||||| | |||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||| |  ||||||||  |||||| ||| ||    
T  35682117 aacctgtgggtccaaataaaacaaaacgaaataacaatagaaagttctagaaaattactaagatttggctaaa-ataaaatactataaaattactaagaa 35682019  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  35682018 aaccctcctgcatca 35682004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 2155826 - 2155718
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |  ||||||||  |||||| |||  ||||||    
T  2155826 gtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactataaaattactaaggaaaccc 2155728  T
Q  120 tcctgcatca 129  Q
    |||| |||||    
T  2155727 tcctacatca 2155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 8781371 - 8781323
Alignment:
Q  19 tgtgggccgaaataaaataaaacgaaataataatataaggttctagaaa 67  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  8781371 tgtgggccgaaataaaacaaaacgaaataataatagaaagttctagaaa 8781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 2165782 - 2165715
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||| ||||| ||||||||||| |||||    
T  2165782 gtgggccaaaataaaacaaaacaaaataataatacaaagttctaaaaaatcactaagatttgactaaa 2165715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 1518026 - 1517980
Alignment:
Q  84 taaataataaa-tactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  1518026 taaataataaaatactactaaattactaagaaaaccctcctgcatca 1517980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 22512273 - 22512387
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  22512273 aacctgtgggccgaaataaaatgaaacgaaataataatataaagttctagaaaattactaagatttagctaaataataaatactactaaattactaataa 22512372  T
Q  115 aaccctcctgcatca 129  Q
    ||| |||||||||||    
T  22512373 aactctcctgcatca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 42891896 - 42892007
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||  |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  42891896 aacccgtgggctaaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataa 42891995  T
Q  115 aaccctcctgca 126  Q
    ||||||||||||    
T  42891996 aaccctcctgca 42892007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 23573447 - 23573363
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatacta 99  Q
    |||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  23573447 aacctgtgagccgaaataaaataaaacgaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatacta 23573363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 23570447 - 23570338
Alignment:
Q  19 tgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaacc 118  Q
    |||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||||  ||||||||||||||||  |||||| |||  |||||    
T  23570447 tgtgggtcgaaataaaataaaacgaaataaaaatagaaagttctagaaaattactaagatttgattaaataataaatactataaaattactaa-gaaacc 23570349  T
Q  119 ctcctgcatca 129  Q
    ||||| |||||    
T  23570348 ctcctacatca 23570338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 37189717 - 37189617
Alignment:
Q  28 aaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctgcat 127  Q
    |||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||| |  |||||||||||||||| ||| ||||| |||||| ||    
T  37189717 aaataaaataaaacaaaataataatataaagttctaaaaagttactaagatttggctaaa-ataaaatactactaaattactaagaaaactctcctggat 37189619  T
Q  128 ca 129  Q
    ||    
T  37189618 ca 37189617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 18468580 - 18468508
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| ||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  18468580 aacccgtgggccaaaataaaacaaaacgaaataataatagaaagttctagaaaattactaagatttggttaaa 18468508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 6845193 - 6845112
Alignment:
Q  23 ggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaa 104  Q
    |||| ||||||||| ||||| |||||||||| |  ||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  6845193 ggccaaaataaaatcaaacgtaataataatagagagttttagaaaattactaagatttgactaaataataaatactaataaa 6845112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 22922076 - 22922148
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| ||||||| |||||||| ||||| ||||||||||| || |||||||||||| ||||||||||| |||||    
T  22922076 aacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 22922148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 24730866 - 24730821
Alignment:
Q  84 taaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  24730866 taaatcataaatactactaaattactaataaaaccctcctgcatca 24730821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 42890243 - 42890182
Alignment:
Q  43 aaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaa 104  Q
    ||||||||||| || ||||||||||||||||   |||||||||||||||| |||||| ||||    
T  42890243 aaataataatagaaagttctagaaaattacttccatttggctaaataatagatactaataaa 42890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 18180926 - 18181014
Alignment:
Q  28 aaataaaataaaacgaaataataatataaggttctagaaaattactaagatttg-gctaaataataaatactactaaattattaataaaac 117  Q
    |||||||| |||||||||||| |||| ||  ||||| ||||||| ||||||||| | ||||||  |||||||||||||||| ||| |||||    
T  18180926 aaataaaacaaaacgaaataagaatagaaatttctaaaaaattattaagatttgagttaaata--aaatactactaaattactaagaaaac 18181014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 859386 - 859495
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  859386 gtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaatcc 859485  T
Q  120 tcctgcatca 129  Q
    ||||||||||    
T  859486 tcctgcatca 859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 1217390 - 1217499
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  1217390 gtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactgaattactaataaaaccc 1217489  T
Q  120 tcctgcatca 129  Q
    ||||||||||    
T  1217490 tcctgcatca 1217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 1220663 - 1220772
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  1220663 gtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaatcc 1220762  T
Q  120 tcctgcatca 129  Q
    ||||||||||    
T  1220763 tcctgcatca 1220772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 13882910 - 13883022
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| ||||||||||||||| |||||||||| |  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13882910 aacccgtgggccaaaataaaataaaacgtaataataataga--gttctagaaaattactaagatttgactaaataataaatactactaaattactaataa 13883007  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  13883008 aaccctcctgcatca 13883022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 13886412 - 13886526
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| ||||||||||||||| |||||||||| |  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13886412 aacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataa 13886511  T
Q  115 aaccctcctgcatca 129  Q
    |||||| ||||||||    
T  13886512 aacccttctgcatca 13886526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 4300420 - 4300306
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| ||||||||||||||| |||||||||| |  ||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  4300420 aacccgtgggccaaaataaaataaaacgtaataataatagagagttttagaaaattactatgttttggctaaataataaatactactaaattactaataa 4300321  T
Q  115 aaccctcctgcatca 129  Q
    ||||||||| |||||    
T  4300320 aaccctcctacatca 4300306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 4303256 - 4303207
Alignment:
Q  80 tggctaaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  4303256 tggctaaataataaatactactaaattactaataaaaccctcctacatca 4303207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 4888947 - 4888992
Alignment:
Q  84 taaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||    
T  4888947 taaataataaatactactaaattactaataaaattctcctgcatca 4888992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 29175610 - 29175573
Alignment:
Q  92 aaatactactaaattattaataaaaccctcctgcatca 129  Q
    |||||||||||||||| |||||||||||||||||||||    
T  29175610 aaatactactaaattactaataaaaccctcctgcatca 29175573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 1883334 - 1883290
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||    
T  1883334 aaataataaatactactaagttactaataaaaccctcctacatca 1883290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 30217652 - 30217608
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||    
T  30217652 aaataataaatactactaaattagttataaaaccctcttgcatca 30217608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 13466590 - 13466547
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||    
T  13466590 aaataataaatacaactaaattacta-taaaaccctcctgcatca 13466547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 43306902 - 43307011
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  43306902 gtgggccaaaataaaataaaacgaaataataatagaatgttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccc 43307001  T
Q  120 tcctgcatca 129  Q
    ||||||||||    
T  43307002 tcctgcatca 43307011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 43304183 - 43304297
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| |||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  43304183 aacccgtgggccaaaataaaataaaacgaaatactaatagaaagttatagaaaattactaagatttggctaaataataaatgctactaaattactaataa 43304282  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  43304283 aaccctcctgcatca 43304297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 53012890 - 53012778
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||  ||||||||||||||  |||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53012890 aacccgtgggctaaaataaaataaaacataataataataga--gttctagaaaattactaagatttggctaaataataaatactactaaattactaataa 53012793  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  53012792 aaccctcctgcatca 53012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 3063962 - 3064078
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaata--ataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaat 112  Q
    |||| ||||||| ||||||||||||||| ||||  ||||||    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||     
T  3063962 aacccgtgggccaaaataaaataaaacgtaatataataataacgagttctagagaattactaagatttggctaaataataaatactactaaattactaac 3064061  T
Q  113 aaaaccctcctgcatca 129  Q
    |||||||||||||||||    
T  3064062 aaaaccctcctgcatca 3064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 3069113 - 3069206
Alignment:
Q  28 aaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctc 121  Q
    ||||||||||||||| ||||||||||    |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  3069113 aaataaaataaaacgtaataataatagtgagttctagagaattacaaagatttggctaaataataaatactactaaattactaataaaaccctc 3069206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 45168530 - 45168590
Alignment:
Q  27 gaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||    
T  45168530 gaaataaaataaaacgaaataataatagaaggttttagaaaattactaaaatttgcctaaa 45168590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 365846 - 365890
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  365846 aaataataaatactactaaattactaataaaatcctcctgcatca 365890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 19795106 - 19795060
Alignment:
Q  41 cgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||    
T  19795106 cgaaataataatagaaagttctagaaaattactaagatttagctaaa 19795060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 2472952 - 2472985
Alignment:
Q  85 aaataataaatactactaaattattaataaaacc 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  2472952 aaataataaatactactaaattactaataaaacc 2472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 50857670 - 50857783
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| ||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50857670 aacccgtgggcc-aaataaaacaaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattactaataa 50857768  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  50857769 aaccctcctgcatca 50857783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 13444217 - 13444324
Alignment:
Q  22 gggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctc 121  Q
    ||||| |||||||||||||||||||||||||| ||  |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||    
T  13444217 gggccaaaataaaataaaacgaaataataatagaaaattcttgaaaattactaaaatttggctaaataataaatactactaaattactaataaaatcctc 13444316  T
Q  122 ctgcatca 129  Q
    ||||||||    
T  13444317 ctgcatca 13444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 13441861 - 13441928
Alignment:
Q  62 tagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  13441861 tagaaaattactatgatttggctaaataataaatactactaaattactaacaaaacccttctgcatca 13441928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 42071546 - 42071598
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaa 67  Q
    ||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  42071546 aacctttgggccgaaataaaataaaacgaaataataatagaaagttctagaaa 42071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 8931083 - 8931016
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||||||| ||||||||||| |||||    
T  8931083 gtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 8931016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 31915382 - 31915338
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  31915382 aaataataaatactactaaattactaataaaaccctcatgcatca 31915338  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 43681292 - 43681248
Alignment:
Q  85 aaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||||||||||||| |||||||||| |||| |||||    
T  43681292 aaataataaatactactaaattactaataaaaccatcctacatca 43681248  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 21849196 - 21849310
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| |||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||  |||||| ||| ||    
T  21849196 aacccgtgggccgaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaa 21849295  T
Q  115 aaccctcctgcatca 129  Q
    ||||||| |||||||    
T  21849296 aaccctcgtgcatca 21849310  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 40779017 - 40779095
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatact 98  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  40779017 gtgggccgaaataaaataaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatact 40779095  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 21845127 - 21845229
Alignment:
Q  27 gaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctgca 126  Q
    ||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||  |||||| ||| ||||||||| ||||    
T  21845127 gaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcttgca 21845226  T
Q  127 tca 129  Q
    |||    
T  21845227 tca 21845229  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 21857122 - 21857224
Alignment:
Q  27 gaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctgca 126  Q
    ||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||  |||||| ||| ||||||||| ||||    
T  21857122 gaaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcgtgca 21857221  T
Q  127 tca 129  Q
    |||    
T  21857222 tca 21857224  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 19501180 - 19501289
Alignment:
Q  20 gtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccc 119  Q
    |||||||||||||||| ||||| ||||||||||| || ||| ||||||||||||||||||||| |||| |  ||||||||  |||||| |||  ||||||    
T  19501180 gtgggccgaaataaaacaaaacaaaataataatagaaagttttagaaaattactaagatttgggtaaa-ataaaatactataaaattactaaagaaaccc 19501278  T
Q  120 tcctgcatcat 130  Q
    |||| ||||||    
T  19501279 tcctacatcat 19501289  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 26140181 - 26140144
Alignment:
Q  92 aaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  26140181 aaatactactaaactattaataaaaccctcctacatca 26140144  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 29341043 - 29341131
Alignment:
Q  41 cgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctgcatca 129  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  29341043 cgaaataataatagaaagttttagaaaattactaagatttggctaaaaaataaatactactaaattactaataaaaccctcctacatca 29341131  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 11194521 - 11194416
Alignment:
Q  23 ggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcc 122  Q
    ||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||||||| |  |||||||||||||||| ||| ||||| ||||    
T  11194521 ggccgaaataaaacaaaacaaaataatactagaaagttctagaaaattactaagatttggctaaa-ataaaatactactaaattactaagaaaactctcc 11194423  T
Q  123 tgcatca 129  Q
    | |||||    
T  11194422 tacatca 11194416  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 18726995 - 18726883
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataa 114  Q
    |||| |||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||| |  ||| ||||  |||||| ||| ||    
T  18726995 aacccgtgggccgaaataaaa-aaaacgaaataataatagaaagttctagaaaatgactaagatttggctaaa-ataaaaaactataaaattactaaaaa 18726898  T
Q  115 aaccctcctgcatca 129  Q
    |||||||||||||||    
T  18726897 aaccctcctgcatca 18726883  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 11190353 - 11190259
Alignment:
Q  25 ccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccct 120  Q
    ||||||||||| ||||| | ||||||||| || |||||||||||||||| || |||| ||||| |  |||||||| ||||||||||| ||||||||    
T  11190353 ccgaaataaaacaaaacaatataataatagaaagttctagaaaattacttaggtttgactaaa-ataaaatactattaaattattaagaaaaccct 11190259  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 18203318 - 18203263
Alignment:
Q  44 aataataatataaggttctagaaaattactaagatttggctaaataataaatacta 99  Q
    |||||||||| |  |||||||||||||||||||||||| |||||||||||||||||    
T  18203318 aataataatagagagttctagaaaattactaagatttgactaaataataaatacta 18203263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 3535899 - 3535827
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| ||||||| |||||||| ||||| ||||||||||| || |||||||||||| | ||||||||| |||||    
T  3535899 aacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcattaagatttgactaaa 3535827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 3542110 - 3542038
Alignment:
Q  15 aacctgtgggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| ||||||| |||||||| ||||| ||||||||||| || |||||||||||| | ||||||||| |||||    
T  3542110 aacccgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcattaagatttgactaaa 3542038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 30049771 - 30049707
Alignment:
Q  23 ggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| |||||||| ||||| ||||||||||| || |||||||||||| ||||| |||||||||||    
T  30049771 ggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttggctaaa 30049707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 30052058 - 30051994
Alignment:
Q  23 ggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| |||||||| ||||| ||||||||||| || |||||||||||| ||||| |||||||||||    
T  30052058 ggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttggctaaa 30051994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 46938 - 47002
Alignment:
Q  23 ggccgaaataaaataaaacgaaataataatataaggttctagaaaattactaagatttggctaaa 87  Q
    |||| |||||||| ||||| ||||||||||| || |||||||||||| ||||| ||||| |||||    
T  46938 ggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttgactaaa 47002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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