View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20170_low_9 (Length: 366)
Name: NF20170_low_9
Description: NF20170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20170_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 23983408 - 23983060
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaactat |
107 |
Q |
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| T |
23983408 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactat |
23983309 |
T |
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| Q |
108 |
gt-------tagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttg |
200 |
Q |
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| T |
23983308 |
gtaaggtgttagtgcgcttacttttatcaccgttttccagagttggctgcaagaaagaaaaatcagaagtaagtatcagagtattgaattttgaggtttg |
23983209 |
T |
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| Q |
201 |
aaataggcatacactttagattgaaaatgtgtctagagtacaactatgcttgagaccggtcgagactgacatatatatgtacaaggaataaattatacat |
300 |
Q |
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| T |
23983208 |
aaataggcatacactttagattgaaaatgtgtctagagtacaactatgcttgagaccggtcgagactgacatatatatgtacaaggaataaattatacat |
23983109 |
T |
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| Q |
301 |
aacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataaa |
349 |
Q |
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| T |
23983108 |
aacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataaa |
23983060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 23990096 - 23989869
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaacta- |
106 |
Q |
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| T |
23990096 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctgtcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactat |
23989997 |
T |
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| Q |
107 |
------tgttagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttg |
200 |
Q |
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| T |
23989996 |
gtaaggtgttagtgcacttacttttatcaccgttttccagagttggctgcaaa--agaaaaatcagaagtaagaatc--agtattgaattttgaggtttt |
23989901 |
T |
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| Q |
201 |
aaataggcatacactttagattgaaaatgtgt |
232 |
Q |
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| T |
23989900 |
aaataggcatatactttagattgaacatgtgt |
23989869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 23966358 - 23966187
Alignment:
| Q |
8 |
agagatgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaa-cta |
106 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| |
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| T |
23966358 |
agagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaa----tttcacaatgtttgataccaaataatacaatgtaaacta |
23966263 |
T |
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| Q |
107 |
tgt-------tagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaa |
175 |
Q |
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| T |
23966262 |
tgtaaggtgttagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagtaagaa |
23966187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 23989729 - 23989680
Alignment:
| Q |
300 |
taacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataaa |
349 |
Q |
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|||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
23989729 |
taactagtaaatagaaaaagagctgtttacccaatttgtgtgcatataaa |
23989680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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